DreEX0075663 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10751648-10754305:+
Coord C1 exon
chr4:10751648-10751695
Coord A exon
chr4:10751772-10751849
Coord C2 exon
chr4:10754156-10754305
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTATTATTAACAGAAA
3' ss Score
8.35
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAATTATCAATCGAAACTGCAAGGACTGCATTTGTCAAGGCAATGTTT
Seq A exon
AAAAACCGTATTTATGAACTTGACACCCGTGGCCCCTTTACAGTCTTTGCCTTCAGATCAGAAAATTATAAAAACCAG
Seq C2 exon
TCAATAGATCTTGTAAAGCGGACTCCTGAAAACACCAGAATCATGAGGTACCACATAGTGTGCTGCCGGACCCTCCTTCCACAAGACCTCATGCAGCCTCGTAACCTGACCACACTTTCTGGGGACATCCTCTCCATCACATACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'53-56,'53-54,54-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(9.9=75.0)
A:
PF0246917=Fasciclin=FE(20.7=100)
C2:
PF0246917=Fasciclin=FE(40.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACTGCATTTGTCAAGGC
R:
GTGATGGAGAGGATGTCCCCA
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]