BtaEX6022799 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67736433-67738224:+
Coord C1 exon
chr5:67736433-67736480
Coord A exon
chr5:67737494-67737577
Coord C2 exon
chr5:67738078-67738224
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCACCTGCCTTCCCCACAGGAA
3' ss Score
12.34
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGCTTCCCAAGAATCCAAAAACATCTCAGTTTTACTTCCAGTTGCTG
Seq A exon
GAACATTCTGTGCGAGACCTGGTTGGCCCTGGCCCCTTCACCGTCCTGGCACCTTTATCTGCAGCCTTTGATGAGGAACCCCAG
Seq C2 exon
ATTAAGGACTGGGACAAAGGGGGCCTGATGCCCCAGATTCTTCGGTATCACGTGATCGCCTGCCACCAGCTTCTTCTGGAAAACCTGAAATTGACCCCAAATGCTACTTCTCTCCAAGGGGAGTCACTTGTCATCTCCGTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'49-55,'49-53,50-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(8.3=62.5)
A:
PF0246917=Fasciclin=FE(22.5=100)
C2:
PF0246917=Fasciclin=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCCAAGAATCCAAAAACA
R:
TGACAAGTGACTCCCCTTGGA
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]