MmuEX6050465 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86872597-86875527:-
Coord C1 exon
chr10:86875480-86875527
Coord A exon
chr10:86873824-86873907
Coord C2 exon
chr10:86872597-86872743
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCCATGTCCCTTCCCGCAGGAG
3' ss Score
11.35
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAACTTCCAAAGAATCCCTCAACGTCCCAGTATTTCTTCCAGTTGCAG
Seq A exon
GAGCATGCTGTCCAAGAGCTTGCTGGACCTGGCCCCTTCACCGTGTTTGTGCCTTCATCTGACTCCTTCAACAGTGAGTCCAAG
Seq C2 exon
CTTAAAGTCTGGGATAAACAGGGCCTCATGTCCCAGATTCTACGGTATCACGTGGTGGCCTGCCAGCAGCTACTGCTGGAGAACCTAAAGGTGATCACGAGTGCCACAACCCTCCAAGGAGAGCCAATTTCCATCTCTGTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'62-73,'62-69,66-73=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.6=56.2)
A:
PF0246917=Fasciclin=FE(22.7=100)
C2:
PF0246917=Fasciclin=FE(40.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCCCTCAACGTCCCAGT
R:
AATTGGCTCTCCTTGGAGGGT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types