GgaEX1055780 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56838754-56839751:-
Coord C1 exon
chr1:56839704-56839751
Coord A exon
chr1:56838979-56839062
Coord C2 exon
chr1:56838754-56838900
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATCCCATCCAATCTGACAGGCC
3' ss Score
6.03
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GAACTTCTCAGGAACTCCAACACATCTAGGTTTTATTTTCATTTAGAG
Seq A exon
GCCTTGTCCGTCAGAGATATTGCTGGCCCGGGCCCTTTCACCGTGTTCATACCTCACACAAACGTATTAAACAACGACCAGCGA
Seq C2 exon
GTGAGGGGATGGCTTGCCAAAGGGGTGATGGCTCAAATCCTCAGGTACCACATGGTGGGCTGTGCCAGCCTGTTACACAGGGACCTGACAACACTCACAAACGTCACTTCTCTGCATGGGGACCCCATACAGATCAGCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(8.3=62.5)
A:
PF0246917=Fasciclin=FE(22.5=100)
C2:
PF0246917=Fasciclin=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAACTCCAACACATCTAGGT
R:
AGCTGATCTGTATGGGGTCCC
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]