GgaEX1057305 @ galGal4
Exon Skipping
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19621643-19632579:+
Coord C1 exon
chr6:19621643-19621766
Coord A exon
chr6:19627548-19627604
Coord C2 exon
chr6:19632464-19632579
Length
57 bp
Sequences
Splice sites
3' ss Seq
GCTTCTGTTTTTCTCATTAGGAT
3' ss Score
10.51
5' ss Seq
GGGGTATGG
5' ss Score
5.84
Exon sequences
Seq C1 exon
AAACTTTTTCACTAAAAGGACAAAGGAACTCAAACCTGCTGTCCAAAGTGCTCCTGGCTGGAAGTTGTTTGGAAAAGTCCCCCCCAGGGAAAACCTTCCAAAAGACTCCAAAATAATTCAGCAG
Seq A exon
GATGACAGTTCTGGCAGTCTTGCGTCAATATCTGCTCTCAGTCTGTTAAACACAGGG
Seq C2 exon
GAATATGAAGCACGGACAGGAAGAACGTATAAGCCTCCACCTCCATCAGCAAGACGTAAAAACATTGAATTTGAACCACTTTCAACTACTGCTTTGATTCTGGAGGATCGACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=0.316 C2=0.658
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000010562fB12685
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGCTGTCCAAAGTGCTC
R:
TCTTGCTGATGGAGGTGGAGG
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]