GgaEX1058187 @ galGal4
Exon Skipping
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9856798-9863003:-
Coord C1 exon
chr9:9862959-9863003
Coord A exon
chr9:9860501-9860549
Coord C2 exon
chr9:9856798-9856864
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATGAGTTGTCTTATTCTTAGGTC
3' ss Score
6.76
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTTACAGAATATAGAGCAAGACCTTCTGACATGACGGCAAAAAAT
Seq A exon
GTCATGTCTTCTCACCTGTTTTATACCTCCATTCCCATCTGTCCTTCAG
Seq C2 exon
GTTGGTGTGACTTCCACAAATGGAGACTTGAAAGGATTTATAGATCAGAACCAGAGTCCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000045629fB12824
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATATAGAGCAAGACCTTCTGA
R:
CTTTTGTTGGACTCTGGTTCTGA
Band lengths:
109-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]