GgaEX0003529 @ galGal4
Exon Skipping
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9845676-9863003:-
Coord C1 exon
chr9:9862959-9863003
Coord A exon
chr9:9856798-9856864
Coord C2 exon
chr9:9845676-9845779
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTGAAAAATGTTTTGTTCAGGTT
3' ss Score
5.98
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTTACAGAATATAGAGCAAGACCTTCTGACATGACGGCAAAAAAT
Seq A exon
GTTGGTGTGACTTCCACAAATGGAGACTTGAAAGGATTTATAGATCAGAACCAGAGTCCAACAAAAG
Seq C2 exon
GTAATATTTCAGTAATCACACTACCAGTTTCCAGTACCAACTCCCCAACAAAGATATTGCCAAAAACCTTAGGACCAATCAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759-'0-11,'0-2,5-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.507 C2=0.704
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATATAGAGCAAGACCTTCTGA
R:
TTGGGGTCCAACATTCACATTGA
Band lengths:
143-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]