DreEX0078398 @ danRer10
Exon Skipping
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4484409-4537240:-
Coord C1 exon
chr15:4537121-4537240
Coord A exon
chr15:4494620-4494680
Coord C2 exon
chr15:4484409-4484497
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCAAATCCTTCTCCTTTTAGATT
3' ss Score
10.66
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CACTCAGGAAGTGAGTACAGGACTGAGCAGTTTTACTGCGCTTTCACTCTCATACATTCTCAAGTTGCTTGTTTTCCACTTTGACAGAACTTCTCAACACATTTCGCTCACAAATACAAG
Seq A exon
ATTGGCGCTGCAGCTCTGTGTGGAGACCTCAAGGCCTTTCTGAACCAAAACCTGTCCAAAG
Seq C2 exon
GCAACATTTCCCTGTTAACGCCGTCCAGCTACAGCCCAGCCAACAAGATCACACTAGGAACGGTCAATTCAAATGTGGGAGCCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835_MULTIEX1-3/10=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGTACAGGACTGAGCAGT
R:
GGACGGCGTTAACAGGGAAAT
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]