MmuEX0047059 @ mm10
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96223094-96273942:+
Coord C1 exon
chr9:96223094-96223198
Coord A exon
chr9:96232682-96232748
Coord C2 exon
chr9:96273839-96273942
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATTAATTTTTTTTTATTCAGGTT
3' ss Score
8.76
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GATATTTTAAAGAACTGTTGAAGACGAAGGTTTTTATTTTTGTGTGTTTTTTAATGGCTTTACAGAATATTAAACAGAATACTGTTTGACATGACGGCAAAAAAT
Seq A exon
GTTGGTTTGCCATCCACAAATGCAGAGCTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACGAAAG
Seq C2 exon
GTAACATTTCACTTGTTGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAATAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411_MULTIEX1-6/12=3-10
Average complexity
C1
Mappability confidence:
86%=86=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.435 C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000188750fB18118
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGTTGAAGACGAAGGT
R:
ATTGGCCCTAAGGTTTTCGGT
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types