MmuEX0047060 @ mm10
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96232682-96273942:+
Coord C1 exon
chr9:96232682-96232748
Coord A exon
chr9:96247050-96247088
Coord C2 exon
chr9:96273839-96273942
Length
39 bp
Sequences
Splice sites
3' ss Seq
CACGTTTTCATTTTCCAAAGGTA
3' ss Score
9.28
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTGGTTTGCCATCCACAAATGCAGAGCTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACGAAAG
Seq A exon
GTAAATAAATACCTACAAGTGGAATTGCTGGGTCATACG
Seq C2 exon
GTAACATTTCACTTGTTGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAATAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411-'13-31,'13-21,15-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=1.000 C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGCCATCCACAAATGCA
R:
TGTTGGTGAGTTGGTGCTTGA
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types