RnoEX0090084 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104084583-104128578:+
Coord C1 exon
chr8:104084583-104084649
Coord A exon
chr8:104099768-104099806
Coord C2 exon
chr8:104128475-104128578
Length
39 bp
Sequences
Splice sites
3' ss Seq
CACATTTTCATTTTCCTAAGGTA
3' ss Score
7.86
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTGGTTTGACATCCACAAATGCAGAACTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACAAAAG
Seq A exon
GTAAATAAATACCTACAAGTGGAATTGCTGGGACATATG
Seq C2 exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX2-7/9=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=1.000 C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000081204fB15026
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGAACTGAGGGGCTTT
R:
ACTGGCCCTAAGGTTTTCGGT
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]