RnoEX0090085 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104084583-104128578:+
Coord C1 exon
chr8:104084583-104084649
Coord A exon
chr8:104117857-104118005
Coord C2 exon
chr8:104128475-104128578
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGTATGTGCTTACTCACAGGTA
3' ss Score
9.44
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTTGGTTTGACATCCACAAATGCAGAACTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACAAAAG
Seq A exon
GTATAGAGGACAAAGACAACTTGCAGGAGCTGGCTCCCTTTCTGCTCATAGAAATTAGGGTCAGATTGAGGCGGTCAGGTTTGTGCAGCAAGCACTCTACTCTCTGGGTCATCTGGATAGCCCTAGTAGCCACATTTGAAAAGAAAACG
Seq C2 exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX2-8/9=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.000 C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTTTGACATCCACAAATGCA
R:
CATTTGGGGTCCAACATTCACA
Band lengths:
171-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]