RnoALTD0030598-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104106740-104128578:+
Coord C1 exon
chr8:104106740-104106801
Coord A exon
NA
Coord C2 exon
chr8:104128475-104128578
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TGTATTTATTGTCTTTTCAGGTA
3' ss Score
10.65
Exon sequences
Seq C1 exon
TGACTGACTGCCTTGGAGCCCGCAGACAGTCGGACATGTACAATTCCAACTATGCAGGTCTT
Seq A exon
NA
Seq C2 exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241-15-21,16-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.354
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGACAGTCGGACATGTAC
R:
TGTTGGTGAGTTGGTGCTTGA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]