RnoEX0090072 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104117857-104128578:+
Coord C1 exon
chr8:104117857-104118005
Coord A exon
chr8:104124984-104125076
Coord C2 exon
chr8:104128475-104128578
Length
93 bp
Sequences
Splice sites
3' ss Seq
GATGACTCTAATTGTGTCAGGTT
3' ss Score
4.96
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTATAGAGGACAAAGACAACTTGCAGGAGCTGGCTCCCTTTCTGCTCATAGAAATTAGGGTCAGATTGAGGCGGTCAGGTTTGTGCAGCAAGCACTCTACTCTCTGGGTCATCTGGATAGCCCTAGTAGCCACATTTGAAAAGAAAACG
Seq A exon
GTTGACAGCCTAACCAGGACTTGGATCCGAAATCAGCAGTTTAATCCAGAGGAGCGTCAGATTCATCAGTGCATTTAAAGGCATGAAGCTGAG
Seq C2 exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241-'22-21,'22-20,23-21
Average complexity
C3
Mappability confidence:
88%=75=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAACTTGCAGGAGCTGG
R:
TGCTTGAAACTGGAAAGGCCA
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]