MmuEX0047055 @ mm10
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96202131-96295127:+
Coord C1 exon
chr9:96202131-96202188
Coord A exon
chr9:96223094-96223198
Coord C2 exon
chr9:96294965-96295127
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTTCCCTTTAACAGGAT
3' ss Score
11.86
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTTCTGTTAAAATAAGCATTCTGACAAACTGCTGAAGAGAGAGCCCTGATAGACTAG
Seq A exon
GATATTTTAAAGAACTGTTGAAGACGAAGGTTTTTATTTTTGTGTGTTTTTTAATGGCTTTACAGAATATTAAACAGAATACTGTTTGACATGACGGCAAAAAAT
Seq C2 exon
TAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACATTTTTCAATGAAGGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATACAATGAGGTAGCTGATGAGCTGGTATCTGAGTTTACCAACTCAAATAACCATCTGGCAGCTGATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411-'1-36,'1-8,9-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.760 C2=0.338
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.1=83.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAGCATTCTGACAAACTGCTGA
R:
CGAATCAGCTGCCAGATGGTT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types