BtaEX0036253 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:127828123-127894558:+
Coord C1 exon
chr1:127828123-127828223
Coord A exon
chr1:127885085-127885187
Coord C2 exon
chr1:127894458-127894558
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTTCTCTTTAACAGGAT
3' ss Score
12.42
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CGCCAAGCGCTGGCGCCACTGTAGCAGAGGCGCCTGAAGACGCGCTCCAAGCTCGAAGAACAGTCCTGCGCGGCCGCCTCGTCCCCTGCAGCCAAGCGGTG
Seq A exon
GATATTCTTTTAAAGAATTATTGAAGACGAAGTTTTTTTATTTGTTTTTTAATGGCTTTACAGAATTTTAAATTGAATGCAGTTTGACATGACGGCAAAAAAT
Seq C2 exon
GTTGGTTTGAATTCCACAAATGCAGAACTAAGAGGATTTATAGATCAGAACCTCAGTCCAACCAAAGGTAAGGACAGTTGAATAAAAATTTTCTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGCCACTGTAGCAG
R:
TGCAGAAAATTTTTATTCAACTGTCC
Band lengths:
189-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development