HsaEX0064630 @ hg19
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751]
Coordinates
chr3:141811868-141868386:-
Coord C1 exon
chr3:141868025-141868386
Coord A exon
chr3:141820577-141820683
Coord C2 exon
chr3:141811868-141811969
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTTTCCTTTAACAGGTT
3' ss Score
12.22
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCGCACTGTGCTGCTCCGCCGCCAAAGCTCGCGCGGGGGAAGCGGGGCTGTAGCTGGGCAGGGAGAGGGCGGACGAAATCGGTAGCGATCTCGGCTGCGGCGCTGCCGCAGCTGCCCGGCCCGCGGGGCGCGCCCTGACCCTTCATCTTTGGGCAGGCTCGAGGGCGCGCGCACGGTTGGCGTTCTGGGGCCTCAAACTCCTGGGCCTTGACCGGGCAGGCCGCGTCTCCCCGGGTGTGAGTCCACCGGGACCCGGCCGCCGCCTAAGCGCGGGCGCCACAGAAGCGGCGGCGCCCGAAGACGCGCTCCTGGCTCGGCCCGACAGCCTCGCTTGGCCGCCAGTTCTTCTGCAGCCGAAGGCG
Seq A exon
GTTGTTCTTTTAAAGAATTATTGAAGACGAAGGTTTTTTTCTTTTTATTTTTTTAATGGCTTTACAGAATCTTAAATAGAATACAGTTTGACATGACGGCAAAAAAT
Seq C2 exon
GTTGGTTTGACTTCCACAAATGCAGAAGTAAGAGGATTTATAGATCAGAATCTCAGTCCAACAAAAGGTAAGGATTATTGAATAAAATTTTTCTGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126-'0-7,'0-3,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.287 C2=0.274
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTTCATCTTTGGGCAGG
R:
TGCATTTGTGGAAGTCAAACCA
Band lengths:
250-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)