DreEX0078397 @ danRer10
Exon Skipping
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4494620-4537240:-
Coord C1 exon
chr15:4537121-4537240
Coord A exon
chr15:4500599-4500673
Coord C2 exon
chr15:4494620-4494680
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTCTACAGGGG
3' ss Score
10.1
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CACTCAGGAAGTGAGTACAGGACTGAGCAGTTTTACTGCGCTTTCACTCTCATACATTCTCAAGTTGCTTGTTTTCCACTTTGACAGAACTTCTCAACACATTTCGCTCACAAATACAAG
Seq A exon
GGGACTGTGCAGTTCTGAGCAGGAGGTATTTGAACAGAAAGAGCCCCTGTCATCATTAATATGATGGCCAACACG
Seq C2 exon
ATTGGCGCTGCAGCTCTGTGTGGAGACCTCAAGGCCTTTCTGAACCAAAACCTGTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835_MULTIEX1-2/10=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGAGTACAGGACTGAGC
R:
AGGTTTTGGTTCAGAAAGGCCT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]