RnoEX0090080 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104046438-104084649:+
Coord C1 exon
chr8:104046438-104046495
Coord A exon
chr8:104075539-104075644
Coord C2 exon
chr8:104084583-104084649
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTTCCCTTTAACAGGAT
3' ss Score
11.87
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTCCTATTGAAATAAGCATTCTGACAAACTGCTGAAGAGAGCGCCTTGATAGACTAG
Seq A exon
GATATTTTAAAGAACTGTTGAAGACGAAGGTTTTTATTTTTGTACGTTTTTTTAATGGCTTTACACAATATTAAATAGAATACACTTTGACATGACGACAAAAAAT
Seq C2 exon
GTTGGTTTGACATCCACAAATGCAGAACTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX2-3/9=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.883 C2=0.253
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATTGAAATAAGCATTCTGACAA
R:
TTTTGTTGGACTGAAATTCTGATCT
Band lengths:
122-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]