RnoEX0090078 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104046438-104075644:+
Coord C1 exon
chr8:104046438-104046495
Coord A exon
chr8:104052533-104052639
Coord C2 exon
chr8:104075539-104075644
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACCTTACCTTTTGAGATAAGGTC
3' ss Score
-0.36
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTCCTATTGAAATAAGCATTCTGACAAACTGCTGAAGAGAGCGCCTTGATAGACTAG
Seq A exon
GTCTCTCACCTAACCTGGAAACAACAGTGTGGCTGGGCTGGCTGGGCAGCAAGCATCAGGGACTCAGTGGTCACCATCTGTCCCGCTGTGCTGCTCACTCATTACAG
Seq C2 exon
GATATTTTAAAGAACTGTTGAAGACGAAGGTTTTTATTTTTGTACGTTTTTTTAATGGCTTTACACAATATTAAATAGAATACACTTTGACATGACGACAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX2-1/9=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.883
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATAAGCATTCTGACAAACTGCT
R:
TTTTTGTCGTCATGTCAAAGTGT
Band lengths:
154-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]