RnoEX0090081 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104075539-104084649:+
Coord C1 exon
chr8:104075539-104075644
Coord A exon
chr8:104077304-104077433
Coord C2 exon
chr8:104084583-104084649
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTACTCTGCTTGGCTCACAGATC
3' ss Score
9.66
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GATATTTTAAAGAACTGTTGAAGACGAAGGTTTTTATTTTTGTACGTTTTTTTAATGGCTTTACACAATATTAAATAGAATACACTTTGACATGACGACAAAAAAT
Seq A exon
ATCTAAACAGTATGTGGAAGGAAATGGGATGTAAAGTGTGAGGCCTGGGCCAGGAGCCTCTCCTATTAAGTCTCGTACCAGAATTACACAGGATACAGGATGGACCCTTTTGCAAAGGGAGTGAGATAAG
Seq C2 exon
GTTGGTTTGACATCCACAAATGCAGAACTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241_MULTIEX2-4/9=3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=1.000 C2=0.253
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000081204fB15024
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGTTGAAGACGAAGGT
R:
TTTTGTTGGACTGAAATTCTGATCT
Band lengths:
162-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]