HsaEX0064631 @ hg38
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]
Coordinates
chr3:142005441-142101841:-
Coord C1 exon
chr3:142101735-142101841
Coord A exon
chr3:142093061-142093127
Coord C2 exon
chr3:142005441-142005544
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTAAACGGTTTTATTCAGGTT
3' ss Score
6.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTGTTCTTTTAAAGAATTATTGAAGACGAAGGTTTTTTTCTTTTTATTTTTTTAATGGCTTTACAGAATCTTAAATAGAATACAGTTTGACATGACGGCAAAAAAT
Seq A exon
GTTGGTTTGACTTCCACAAATGCAGAAGTAAGAGGATTTATAGATCAGAATCTCAGTCCAACAAAAG
Seq C2 exon
GCAACATTTCATTTGTTGCATTTCCAGTTTCCAATACCAACTCACCTACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126_MULTIEX1-4/20=2-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.186 C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAATACAGTTTGACATGACGGCA
R:
CATTTGGGGTCCAACATTCACA
Band lengths:
135-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development