GgaEX0003529 @ galGal3
Exon Skipping
Gene
ENSGALG00000002753 | F1N8A4_CHICK
Description
NA
Coordinates
chr9:11444568-11462175:-
Coord C1 exon
chr9:11461851-11462175
Coord A exon
chr9:11455690-11455756
Coord C2 exon
chr9:11444568-11444671
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTGAAAAATGTTTTGTTCAGGTT
3' ss Score
5.98
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGATAAGCTCTGCTAGCACAGTAATATATCAGGACTCTGTATTTAAGATTACATCTCTGAGTATTTCAGGCACTGTAAAGTTGTGGTGTATGTGCTGAACCTTCTGTTGTGGTAACTTTATTAAAAATAAACGCATGCAAAATTTAGCTGTCCTGGGGAGATGCAGGGTTCAGATAGAGAGCTAACTGAGAATGCATTTTAACTCTCATGTTTTAATTTACTTTCTTACAGGGTGTTGGTTTTAAAGATTCTGTGAAGATGAAAAGGGATATCTTATGGTTTTACAGAATATAGAGCAAGACCTTCTGACATGACGGCAAAAAAT
Seq A exon
GTTGGTGTGACTTCCACAAATGGAGACTTGAAAGGATTTATAGATCAGAACCAGAGTCCAACAAAAG
Seq C2 exon
GTAATATTTCAGTAATCACACTACCAGTTTCCAGTACCAACTCCCCAACAAAGATATTGCCAAAAACCTTAGGACCAATCAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002753_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.286 C2=0.571
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCTTACAGGGTGTTGGT
R:
TGGCAATATCTTTGTTGGGGAGT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]