GgaEX1060170 @ galGal4
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr5:49718058-49736656:+
Coord C1 exon
chr5:49718058-49718713
Coord A exon
chr5:49719419-49719607
Coord C2 exon
chr5:49736515-49736656
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATGTTAATTATTTTGCCTAGGGA
3' ss Score
5.7
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATATGCGGTGCTGGGGGCGGGACGAAGGCCTTTAAAGGGGCACTGCCGGCAGCCGCCGCGCCGCTCCGCTCCCGGTGCCGAGCGGGGCCCCCCCACGAGTCCGCCGCCCTCCGCGGCTCCGAGCCCCGGCAGAGGGGCGGGCGGCTCCGGTCTGTGCGGGACATCCGCCGCCGCTGTCACGGAGCGGCCCCGGCGGTGCGGGAGGAGTTGTGGACGGAGCCACTTTTCCTACATAGAACGGCCTCTCGCTGTCTGGCGGGAGCGGGCAGCGCTTTGGTGGCTTTATTTTTGTTGTTTTTGTTGTTTTTTGTTTTTTTTTACGCCATCCGTCTCCTGCGCTGCTTTTGCAGCATCGCGTTTTGCTCGCTTGAATTAATGATCGCGTTGTAGGGTTAGGGAAAATAACGAGTGTTTAAAAGTTTATACTGAGTCATTCCTCTGCAGATGAACCTATGACTGACTCATAATCTGAGAACTGCAGTGGCTTGTAAAATAGGAAG
Seq A exon
GGAGAAGGTTTTGATGTTAAGAGAAGAGGTACTTGGATATTTGTACTGAATCAGAGTTCTTTGTGGCTGGGCTGGGAAACCCCTTTAATACAGCCTGATAACGGAAACACTGATGTGTCATGAGTTTGGGCACTGCAAGCAGACTGCACTGGGAGGTTATAAAAGTTGCTTCAGTACAGCATGAGAATG
Seq C2 exon
CAGGAAAGCCTGAGTGCTTAGGCTTTAACTGAATCAAGACCAGCTCTCAGCAGCAGGAGACAATATATTAATCCATTGGAAGTACACACTGCAGTTTCGTGTATCACTGTGTTTATGCTGTGAATTTTTTTCATGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389_MULTIEX1-1/7=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCTTTGGTGGCTTTATT
R:
GCCTAAGCACTCAGGCTTTCC
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]