GgaEX1060171 @ galGal4
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr5:49718058-49736656:+
Coord C1 exon
chr5:49718058-49718713
Coord A exon
chr5:49720697-49720791
Coord C2 exon
chr5:49736515-49736656
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTTTTAACCTGCAGTGA
3' ss Score
8.98
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
ATATGCGGTGCTGGGGGCGGGACGAAGGCCTTTAAAGGGGCACTGCCGGCAGCCGCCGCGCCGCTCCGCTCCCGGTGCCGAGCGGGGCCCCCCCACGAGTCCGCCGCCCTCCGCGGCTCCGAGCCCCGGCAGAGGGGCGGGCGGCTCCGGTCTGTGCGGGACATCCGCCGCCGCTGTCACGGAGCGGCCCCGGCGGTGCGGGAGGAGTTGTGGACGGAGCCACTTTTCCTACATAGAACGGCCTCTCGCTGTCTGGCGGGAGCGGGCAGCGCTTTGGTGGCTTTATTTTTGTTGTTTTTGTTGTTTTTTGTTTTTTTTTACGCCATCCGTCTCCTGCGCTGCTTTTGCAGCATCGCGTTTTGCTCGCTTGAATTAATGATCGCGTTGTAGGGTTAGGGAAAATAACGAGTGTTTAAAAGTTTATACTGAGTCATTCCTCTGCAGATGAACCTATGACTGACTCATAATCTGAGAACTGCAGTGGCTTGTAAAATAGGAAG
Seq A exon
TGATGAAGTGGTGACATAGAAACCACAGCAACAAAGGGCTGGCAAAGAGAATGTAACTGGTCTCCCAGCTCTGCCTGCTGGAAGCCCACCCTGTA
Seq C2 exon
CAGGAAAGCCTGAGTGCTTAGGCTTTAACTGAATCAAGACCAGCTCTCAGCAGCAGGAGACAATATATTAATCCATTGGAAGTACACACTGCAGTTTCGTGTATCACTGTGTTTATGCTGTGAATTTTTTTCATGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389_MULTIEX1-2/7=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCGTTGTAGGGTTAGGGA
R:
GCTGCTGAGAGCTGGTCTTG
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]