GgaEX1061826 @ galGal4
Exon Skipping
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18047527-18051500:-
Coord C1 exon
chr7:18051434-18051500
Coord A exon
chr7:18049943-18050052
Coord C2 exon
chr7:18047527-18047657
Length
110 bp
Sequences
Splice sites
3' ss Seq
AACATTTGGTTTCCCCCCAGGAT
3' ss Score
9.47
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAGGACCAGGATGGTAGCCAAGGTGTAGGCAAGCGCAAGAGGGTGAAACTAAGCAGCACCACCAAAG
Seq A exon
GATTGTAGTCTTCCCCCCCCACTGAGGTATCCCAACATGGACTGTGCTCATGATGTTGGTAGCTCCTAATATCAGCCCCACAGGATGGGAATCTGCCAGTGGGGGAAAGG
Seq C2 exon
ATCAGTCTATCATGGATGTTTTGAAGCATAAATGTTTTCTAGAAGAATTATTGTTTTGGACAATAAAATATGAATTTCCACAGAAGATGGTGACTTTCTTACTCAACATGCTGCCAGATCAGGATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0065015=CRAL_TRIO=PU(12.3=36.4)
Main Inclusion Isoform:
ENSGALT00000015660fB13429
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATGGTAGCCAAGGTGT
R:
TCCTGATCTGGCAGCATGTTG
Band lengths:
186-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]