GgaINT1029157 @ galGal4
Intron Retention
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18047527-18051500:-
Coord C1 exon
chr7:18051434-18051500
Coord A exon
chr7:18047658-18051433
Coord C2 exon
chr7:18047527-18047657
Length
3776 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TCCTCCAACCTTTTATGCAGATC
3' ss Score
7.3
Exon sequences
Seq C1 exon
GAGGACCAGGATGGTAGCCAAGGTGTAGGCAAGCGCAAGAGGGTGAAACTAAGCAGCACCACCAAAG
Seq A exon
GTATTTATGTAAAAAGTTCCGATCTCAGTGTGTCATATCTGCTTTCTGTCTATCTTAAAAAAAAAATTATCTAGGAATACTGTCATTCATTTCCCTTCCTAAGCACTGTGGTATTGCATGTGGCAGGTATTAAATGTGACAAAGTCTGAAAAGAATAATAAGCGCAATAGTACTAATTGGCAGCTTTGATTTCTCTTAGGAGTGAATACAACTTTCTGGAACTTTGATCAATCATTTTGTCACCTTCATGTCATAAGATGACCTCTTAACAGTTAATTTCATTTTCACATTTTGGCTGACATGGCTGCAACACATCTCGGTGAACAGGTTTTTGATGTGTGTATTCTTGGCAAGTTTTTCTTTGTGCCACTACACAACGTGATTGAAGGCAAGAATGGTTCTCTGGTTCTGTTTAGTCTTTCTGTAATATTCTTCTAGTAATACTGAGGAAAGATATGTGGGTGAAGTCTCCTTTGTTACCACTCTGTTATTTCCCTAAAGTGAAATTAATCCTCTGTGCAATTTCTAGCCTGAGATGAGTATCGCTCATTAGTGCGAGTTTTAATTCAAGAATGAGCATAAGCTAAAGATAAGGTAGCCCTATCCTGTGCTTTTCATGAGGTTTTTGTGTTTAAAATATATTTTAAAACTTTTTTCATGGGAGTGTGAGGAGTCTGGCATGGGAAGCAGAAAGAAATCGCAGGGTTTAAGAAAAGAACATTTGGATGAAAAGCAGTGGTGGAAGTTGAAATAAAATGCTTGTGAAGGCTTTGAAGTGGAGATTTGGAGTTTGAATTTGAAATGTGCAAGTTCATGAAGTCAGTAAAAAGGCATGAAAGTATTGTGAGGGTTAAGGAAAAGGCAAATCGCTTATTTCTGGTGTTTTCAGATGTAATGAAAAAAGATCACAAAGCCAGAAGGGCAGAGAACTGAGTGTTTTGGTATTTGCGTTATTAAGAGGTGATCTTAGCAATGATATGTGGAAGATCATGAATTATCTGAAGATGGGTGCCTTGATTTCTGTATACTACAGCAGTAGATGTTTGTATAAGCAGTGATAAGAGAAGCTGAGTGGAAGCTGGAACAAATCAGAATTAACAGAACAATATGTTCTGGAAGCGACGATATTTCTGGAGAAATGCAAGAGATGTACTGTCACCCAAGGAAGACTCTCTTGCTTGAAGACTGTTTACTTGCCTAAGATGTAAGTTAGTCAGCTAATGCAAGAAAAGATTGGTCTTTCTGATGTGTAATAACTGATTTTCGGAAATAGTCAGGGCAGAAGCTCAGAGATCTAGAACCTCTGAGATCTGAAAACCAGTATCAGCAATGGCATTTCAGGAAAAGTGGTTCTTTAATTCAACATTTGGTTTCCCCCCAGGATTGTAGTCTTCCCCCCCCACTGAGGTATCCCAACATGGACTGTGCTCATGATGTTGGTAGCTCCTAATATCAGCCCCACAGGATGGGAATCTGCCAGTGGGGGAAAGGGTAAGTATCTGTTTTTATTAAATATTGAATAGTTTTCTGAAGTTTTCAGTATTCATATTTTATGTCCAATTTGGTATAAAATAAGAGTATGAAAAGAAAATTTTAGAAAACTGAGTATTGAATAAAAACAGATTTACCTTTTCCATACAAGCAGACTCCCTCTCCTGTCTCAGGTCTGTAGTGGTACTGGCTTCATATTGGAGTTGTTTATAGGCTGGGGATATCATAGAACACTAAGCCTCATATTCCAGGAAGGTGTTTTGAAACAGGCTGTGGTTCTTTGGTTTCTTTAAAAATGCTAGTGTTTTTATACTGAGACGTTGCTGGTACAGGCGTGCAACTGAGTATTGAGAGATGTTTTTATTGTTACTCTGTTTTAAAACTTGCACCCATTTGAAATACATAATACTTTGGACAATTTTGAACCCACAGGCAATTTTTTTTTCTTTTAGTTTGTTGGGAGAAATTTAATCATGTGGTGCTTTTCTCAAGCATGGAAACGTTAGTTCAAGTGTTATTAACAAATTTTCCAAGTTGGGTAAGAGCATACTGCCTACTTAAATTCTGTAGCAGGTATAAGTGGAAACTGACTGAAACCACTGTATAAAATAGTTAATACGTGCTGTCAGGGAAACTGCACATCTGTAACAGATAAGGTGTGGTGTTACTTGTGTTCATGCCTGGTGTTTTCACTAGGGCACTTGCAGTGTGCCTAAACACGTGATGTCTGGATGGAGGACTTCAGTCTGTGTGGCTTCCAAGCTTTCATGGGCAGTAAATTCACATACATAATTTCTTAACAAGACACGGGGAGGAAAATGTAAATGATCCATCATGAATTTGCTGCAGTAGGTGATGTGTGACACTCTACAAAATATTTTGTGAAAATTAAAACGTCTTTCATGAACTTATGAAGGTAATTTTTTACTTCAGCACTTGCAAAATATACTGAGTGAAATATTCTCTTCTTTGTGTGACTTGCTAGAGTCCCTAAAACTTAAAACATTCATTATTTCTTATGATCTTTCACAATTCCTGAGATATTTTTTGGACTGATTAATCACTTGACAGTGGAACTTTGACCTTTGGTAACGGTAAAGGAGGATCCCTGCACTCCATTCAGTGCAGTTCCTGAAGCTGTCATACATACCTTACTGAAGTGGTGAGTCTCCAAGGCTACAATATGTCCTGATTCAGCGCTTCTGGATCTGTGCTGATGGAAGCACTTCATACAGTCCCATCTGTAGTATGGCATTCTACGTGCAACGGGTTTGTCCCCAAGTTGGTTTCTAATTACAAAGAAGCAATATTACCATTTTCTGTAGTCTGTGTATGTTACGGGAGGAAACGATACCTGTTGTACTTTTGGAAAAATGATGGTAAAGAGACTTTGCATTTTAGCATTCCTGTTAAATAAAGTTAGTTAATGCTGTTATCAAGCCATAACTTTATGAACAGTTATAGCAGAGGTCAGTGTTTGTGCAGTGTTGCAGTGAACTGTTTCATAAAGCTAATCTCCTTGAAAACTTGACTGACAAACTGGAAAGGTTATTTGATTTCTTTATAGGTACTCCCCAGGGATGTACAAGTGAGTGTCAGCATGAATGAGATGACAGAGTGAGCAGCCAGGGGTTCACTGGGGATGTATGAGACTTGTCTATTACACCCTCTCATTACCTGATCAGGACATTATGGTGGCTTTATGTAAACAAACAAAATAATAGCTTTGGGGAAGGAGATCCATCACTGACTTGAAATATGTGTTACTCTTGAAAACTAAGTACATATGTTGCTTTAAAAATAGGAATAGCTAATACACTGTTGTTTCTGTTAAGTTTTAGTGCTTTGCAAATGGAACAAAAGTGTTCTTATGGGGTAAAACAGTTAAACATAAGTGGTGCTTTGCTGTTTTCAATTCAGCAAAGCACTGCTATACGTTAACCTTCAATTAAGAGGCTGTGTAAATTGCTAAGATTCACTAGAATGTGTGGAGCTATTGCAGTAAGGTGATACAATTCAGTGCAATCAATGAAGACTGGACTCTGGCAGAATTGTACTGAAAACTTCACTGACTTCTCTGGGAGGATCTTTTTATTCTTGTGTAGTCTGTGCTGTGTTGTATTGGCCATTTTTGTTTTTCCTCAGTGTTTTTGAAAACATGTAGAGTACACTAAGATTTTCTTAAATTTTGTTAGCTCTATGTCATTGCAGCTGCATTATAGTTGTTATTGATTAAAAATTGTAATGTAATTGTTACACATCCCCTCCTCCAACCTTTTATGCAG
Seq C2 exon
ATCAGTCTATCATGGATGTTTTGAAGCATAAATGTTTTCTAGAAGAATTATTGTTTTGGACAATAAAATATGAATTTCCACAGAAGATGGTGACTTTCTTACTCAACATGCTGCCAGATCAGGATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065015=CRAL_TRIO=PU(12.3=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]