HsaINT0176837 @ hg19
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170747675-170751821:+
Coord C1 exon
chr2:170747675-170747741
Coord A exon
chr2:170747742-170751690
Coord C2 exon
chr2:170751691-170751821
Length
3949 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ATTTCATTTTTCATGTGCAGATC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GATGATCAGGATGGTAGTCAAGGTCTGGGCAAGAGAAAAAGGGTAAAACTAAGCAGTGGCACCAAAG
Seq A exon
GTATTTGTATTTATTATTATTTTTTTCCTTGAATAAAATGCTTCTAAAAAATGCCTAATCACTAAAAATACTTGATGGGCTAGCCATACTGACATCAAAGCTGTTTGAAGGGAGGCTTATGTTATTAGATTTATCTAATAAGTCTTGGAGAAAGTATTGTTAAGCGATTACTATTGGGTTTTGTTCATTATTTTCATCATAAAATATGCATTATCATATTTGAGTCCCCCCCAAAAGGAAGTCTTTTCATTGATTGACTGATTTGGCTCCAGTGTTTTTTGTGTGAATTTGTAGTTTGGCCTAGTTCCTTTTATAATCTGGGGTATGCAATTTCTAGAGTGAAAAAAGACAAGGGAGATGACATGGTGAGAGAGAGACAGAGACACACACACACACACACACACACACAGGGAATGAACAAATAGTACTTAACACGTCATAAAGGCTCAGTAGGGACTCATGTGTTTACTCAAAGGAGAAAGTATTATAAATATGCTTTGTAGTGAGGGACTAGATTAGTAATAATAATGAGTAATATTTATTGAACCTTTTGTATGTGTTAGACATGTTAGAGATTATGGCTAATGAGAGGTAGATCCTAAATTCATATCCCAGAGCCTAAGCTTTTAACCACAATGTTTACTTGACTGTCACTAAAAGCTTTTCTAGAATACTTGCGATTAGTTGACAAGTCTGTGCTTTGGATTTTTGCCAGGGATTTTCATATCTTAACGTGTGGTTGGTTTAGAAAGTCTCCAGAGGCTAAAATGTTATTTTGATGAAAATAAATTTCTTACTTCTGCTGTTGATTAAGTGTATCTTGTGAAATATCTAGGACTGCCTAGAAAGGTGGAATATGCAGGCACTTTGAGTTGCAGGTTCCTTTTCTAAGTCTCAGTTACTATGCTGCTGCATTTAACTTGGGGGTTGCTAGGAAAGGGTATGGAATTTGATCTGCAGTCCAGGATGCACACATACAGGTATGTTCTCCTTTTTTCTGGCTCAGCAGAGAACCTGTATGTCTGAAGGAAATTAGGAACTCATATGGCCTTCTGGCTCTTTAACTTATCAGATATTAAACTGAGTCCTTGTGACACATCTGAGTTGGAGATTGTTAGGCACATAGTTGAGTTTAAGCTTTAGGGGTGCCCAGAAAATACCTGCTGTGGTGTAAGAGGTCATTGTTTTCCTTCAGCCTGGTCACACTCTGACTGAAGATACTTTTTATGCAGACTTAAGTTAAAGTGTTTTTTTCTTTGTCTGTTTTTAAATACCTGAACTTTTTTCACATGTGTGTTTGGATTGAGTGCCTTCTCTTCCTTGTAATGGTAAGAAATAGTACTGAAATTTAAAACTTCATCAGTTACCATTTTCAGTTTAAGTATGTACATGGAAGGAATGGCTTTGTGAATTAGAACCCCAGGTGTTTTCAAAAACTGACCTTATTTTGAAGATATCTGAAGTTTGGGGAATGGCTCAATTTTTGTAAGAATTTTGTTCCACAGCTTGAAAAGTGCACTGAAAAGAAAATATGTAATGGTAAGGAAGAGGCCAGACACTATGCTAACCTCATCACTGCCTGTTCTCTAAACCTGCATTTTAAGGGTGAGGAAACTGAGGCCTTGAGGGCTTTAACTATATGGCCAAGATTCCAAGATTATTGAGCTAGTGAGTTGCAGAACTTGAACTCTGCTCTCTTAATTAAAACCTTTGCTTTAGTCATGCATTTACAGTACATAATGATTCTTTAAAAATCTCTTTTTACAATTTGACTTAAGGTAGTTTACACATTGTTAAAAGTCATGTCAAGATTTAAAGATAGTCAAACATAACTAATGGAAGCATTTCTGACTACATTTTCATAATATTACACAATATAACACGTGCTTTAACATCTTGGGAGACTGACATCACCTATTTTAAGAACAACAAAGAAGACATTGCTGGAGTTTTTTTGGTCTGCAGATAAAAATATTGAATTCTACATAACTGCAACTATTTTTATTTTAGCAGAAGCCACAGCTTTCCTGGTATATTCAGGTTGTTTAATTGATTTAAAACATTGTTAATGTATATTTTCTTTTAAGTGCTTGACAATTAATAATAATTATGATGGCTTCAGGCTTTTCATTTGCCTAATGCAGGCTTGCAGAGTCATAACTATGAATTCTATGATTAATAGTACTAGTTTTATTCAGCTTTGTAAATACATTAAGAAGCACTTACCAATGAGAGCTTTCATTTTGGTAGTCTGTGAAATTATCAGTCACATTGTGTTAAGTGAATTGTGAGAATTAAATTAGGTACAGCAGTGTGCTGTGGATTATAATTTATTTTTTTCAGCACAGGGTCTCACTGTGTTACCCAGGCTGGAATGATCAGTGGCATGGTCTTGGCTCACTGCAACCTCTGCCTCCCAGGCTCAAGCGATCCAATCCTCCTGTCTCAACCTGCCGAGTAGTTGGGACTACAGGCGCATGCCACCCCACCTGGCTGATTTTCGTATTTTTTTTAGAGACAGGGTTTTGCCATGTTATCTAGGTTGGTCTCAAATTCCTGAGCTCAAGCCATGTGCCCACCTCAGCCTCCCAAAGTGCTAGGATTAAGGTGTGAGCCACTGTGCCGAGCCTATATTATAATTTTTAGTTACAAATCTTAAATTCCTGCTACCTGATTCTCTTGGGCCCTGTTTTTATTACTTTTTATCTTTGAATCTGTCAGTGAATTCTTTTGACTGTATTTTACCTCATTTCTTGCAATCTTGGTTTTTGTTTTTAAATCATTGTCATGCCCTGGAAATGATCTGTTTCAGGAAGAATAGATTTCTGTTTTATAAGTAGAAAATTCTGAGTTTTGAAAATAATTACTTAATTGCTAATAATAAAGAAATGTAGCCTGGACAACACAGCAAGACCATGTCTCTTCAAAAAATAAAAAATAAATTAGCAGGGTGTGGTCTTGCACACCTATAGTCCTAGCTATTCGGGAGGGTAAGGTGGGAGGATAACTTGAGCTGAGGAGTTTGAGGCTGCAGTGAGCTATGATTACGCCACTGCACTCTGGCCTCCAGAGTGAGACCCTGACTCTTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGTATAGTGTTACAGTGTACTTGTCTTTGTATGTTAACCACTACTATATATCACTTATGTCACCACTGAAATGGAATTAGGGAGTTGGAAGATATTTTTGCCTTTCTGTAGTTAAAATCATAATATCTTCAGAAAATACGATATTTTGGTGCTGTTTTTCTTGTTATTAATGAAAAAACTGCGTTAAAGTTATATCTAATAAGGACTGATTCAAGCCTTAGTAAATGCAGTGTTTTGTAAAGAAAGTGATGACATACTGAGCTTGTTACTCATTTAGACCCATTACCTGGGGAGATGTGGTATGAACACATTATTCAATATTAGAAGAAGTATAAAGCTGGGGTAGTGTTAATTGAAAAAACTCTACAAGGTTATCCTGGAAGACACCTTGAACAGTGATGTAGTTAGGGCTGGACCTGAGGATTTTGATGCGTGTGAGATACTGTTTTTTCCAGTCTCTCATCTAAGTTTAGCCCCTGCTTAAGCAGTGTCACTGGAGCCAGTACATCATAGTTGACACTTCTTGTATCCTCTTGATGTCTTTGTGGATAATGCTTTCTTCCATTGAATACCTTTATTTAAAAAGGGCATCCATTCCCCCCATTCATTTTTCCACTTACTGCTTTATATTAAAATATATGCATTAAATTTTTTCTTATTTATATACTGTGTACATTATAGAAATCTAGCTTGTCAATATTATTGCATTATTGTAAGGATATTTTTAACTTTTAGATACTTTCCCATTTTATGGTTTATGGGTTATTAGTTATAAAATGAGATGAGCAACTTCAATCATTAACTGATAAATTTCATTTTTCATGTGCAG
Seq C2 exon
ATCAATCCATAATGGATGTTTTGAAGCATAAAAGCTTCCTAGAAGAACTATTATTTTGGACTATAAAATATGAATTCCCTCAAAAGATGGTAACTTTCTTACTCAACATGCTTCCAGATCAAGAGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-UBR3:NM_172070:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)