GgaEX1063576 @ galGal4
Exon Skipping
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:406999-407510:+
Coord C1 exon
chr5:406999-407084
Coord A exon
chr5:407158-407275
Coord C2 exon
chr5:407425-407510
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATGCTCCCTTCTCCCCACAGAGC
3' ss Score
12.85
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAAAATGCAGCTTCCGTGGTCGGACCTACGCGCACGGAGCCCGCTTCAGCTTGGATGGGGACGAGTGCACCACCTGCGTCTGCCGG
Seq A exon
AGCGGGGAGGTGGAGTGCTCCTTTGCCCCGTGCCCGGTGCTGGACTGTCCCCAGCAGCAGCGGCAGCTGCGCCCCGGGCAGTGCTGCTTCAGCTGCAAGGACCCCCCGCGCCCCTCAG
Seq C2 exon
GCTGCTTCGTGGACGACAATGGGGTCGAGTTTCCCATTGGACAGATCTGGTCTCCGGGTGATCCCTGTGAGTTATGCGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882-'4-12,'4-10,6-12
Average complexity
S
Mappability confidence:
90%=60=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(44.1=89.7)
A:
PF0009313=VWC=PD(52.5=77.5)
C2:
PF0009313=VWC=PU(46.6=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATGCAGCTTCCGTGGTC
R:
TGGCAGACGCATAACTCACAG
Band lengths:
171-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]