MmuEX6031529 @ mm9
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10727540-10729927:+
Coord C1 exon
chr19:10727540-10727625
Coord A exon
chr19:10728724-10728841
Coord C2 exon
chr19:10729842-10729927
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTCTCTCTTCCAGAAT
3' ss Score
12.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG
Seq A exon
AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG
Seq C2 exon
GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(44.1=89.7)
A:
PF0009313=VWC=PD(52.5=77.5)
C2:
PF0009313=VWC=PU(46.6=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCTATTTCCATGGCCGG
R:
CTGGCAGACGCATAACTCACA
Band lengths:
170-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: