GgaEX1063577 @ galGal4
Exon Skipping
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:407158-407893:+
Coord C1 exon
chr5:407158-407275
Coord A exon
chr5:407425-407510
Coord C2 exon
chr5:407797-407893
Length
86 bp
Sequences
Splice sites
3' ss Seq
CGTGTCCCTGCCCCCACCAGGCT
3' ss Score
8.28
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGCGGGGAGGTGGAGTGCTCCTTTGCCCCGTGCCCGGTGCTGGACTGTCCCCAGCAGCAGCGGCAGCTGCGCCCCGGGCAGTGCTGCTTCAGCTGCAAGGACCCCCCGCGCCCCTCAG
Seq A exon
GCTGCTTCGTGGACGACAATGGGGTCGAGTTTCCCATTGGACAGATCTGGTCTCCGGGTGATCCCTGTGAGTTATGCGTCTGCCAG
Seq C2 exon
GCTGATGGCTCGGTGAGCTGCAAGCGGACAGATTGCGTGGAGACGTGTCCCTACCCCATCCACATCCCGGGGCAGTGCTGCCCCGACTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882-'6-14,'6-12,8-14
Average complexity
S
Mappability confidence:
86%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.5=77.5)
A:
PF0009313=VWC=PU(46.6=93.1)
C2:
PF0009313=VWC=PD(50.0=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCCTTTGCCCCG
R:
GATGTGGATGGGGTAGGGACA
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]