GgaEX1063578 @ galGal4
Exon Skipping
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:407425-412683:+
Coord C1 exon
chr5:407425-407510
Coord A exon
chr5:407797-407893
Coord C2 exon
chr5:407964-412683
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCACTCCTTTCCCCTCGCAGGCT
3' ss Score
11.89
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCTGCTTCGTGGACGACAATGGGGTCGAGTTTCCCATTGGACAGATCTGGTCTCCGGGTGATCCCTGTGAGTTATGCGTCTGCCAG
Seq A exon
GCTGATGGCTCGGTGAGCTGCAAGCGGACAGATTGCGTGGAGACGTGTCCCTACCCCATCCACATCCCGGGGCAGTGCTGCCCCGACTGCTCAGCAG
Seq C2 exon
GATGCACCTACATGGGGCGGATCTTCTACAACAACGAGACCTTCCCGTCCCTCCTGGACCCCTGCCTCAGCTGCATCTGCCTGGTGAGGCACGTGGGCTGTGGGGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCAGTGCCCGAGCGATACAGACGCCACGTCTCTCTGCAGGAATGAGAAAGATGTAAGTGAGGAAGTCCTCAGGAGGTCCCCGTGAGGTCCCCAATGGCTCACCCAGACTGCGCACAGCCACACCAGCAACAATGCTCAGCTCCAGGCAGGACAGACCGCCCAGGTTGTTCACCACCAGCACCACGGAGGCTCCTACAGGGCAGGGAGCAGAGTGAGAGCCCCACTTGGGGCACAAGAGGTGCATAGGGGCTAGGGGGACTCACCGGGGCTCAGGGGCAGGTGAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.424
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.6=93.1)
A:
PF0009313=VWC=PD(50.0=87.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGACGACAATGGGGTC
R:
CTCACCAGGCAGATGCAGC
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]