MmuEX6031527 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10655352-10658082:+
Coord C1 exon
chr19:10655352-10655437
Coord A exon
chr19:10656610-10656706
Coord C2 exon
chr19:10658000-10658082
Length
97 bp
Sequences
Splice sites
3' ss Seq
GATGTTTCTCCCTCCTTTAGGCA
3' ss Score
10.99
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG
Seq A exon
GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG
Seq C2 exon
GCTGCACCTACACAGGTAGAATCTTCTACAACAACGAAACGTTCCCGTCAGTGCTCGACCCCTGTCTGAGCTGCATCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'18-22,'18-18,21-22=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.6=93.1)
A:
PF0009313=VWC=PD(50.0=87.9)
C2:
PF0009313=VWC=PU(46.4=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTCTGGATGACAACGG
R:
CAGGCAGATGCAGCTCAGAC
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types