GgaEX1065402 @ galGal4
Exon Skipping
Gene
ENSGALG00000026486 | ZNF322
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:HGNC:23640]
Coordinates
chr4:70163415-70166972:+
Coord C1 exon
chr4:70163415-70163606
Coord A exon
chr4:70163996-70164046
Coord C2 exon
chr4:70164672-70166972
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGTGTTTGTCCTAAGGCA
3' ss Score
8.63
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGCATTTCAAGGTTGAAGAGTGACTTGTGTGAAAGATGGTAGATCCTGTGAAACCATGTGAGTCTTCTAGCTCTCAGTGTAACTGGCCACAGCCTGAAGAACCATCCCAGAAAGAGGAAGGAGAAACCAAAGAATCAAAGATCAAATACTACCTGCTAACAGTTGTTACAGAAGACCGCCTTAAGGAGCTAG
Seq A exon
GCATTACCAAGCAAGATTGTCAAGACTTTTCAAGGAACAGACGTGATGGTT
Seq C2 exon
TGGCTGCTAGACTTGGGAAAGAAGTGGAGAATCATGAACAGGAGGGGCTGGTACGTGCAGAAGAGCACAAGGTGTCATCAGGAAGTCAAAGAGAAAACATCTTTCAGATCAATGACCTAGGTTGTCAGAAGGGTGAAAAGTCTCAAAATGCCAGTTTGCAAACAGCCTTTGAGGAGAAACAGACAGCAGTATCTAGGAAGAGATGCTGTAATATGGGAAACTTCCAAGACAATGTGATCTCAGGGAGACCTTCACCAGGACAGAGTACTTATGAGTGCAGTGTGTGCAAGAGATGTTTCAGCCGCAGCTCAAGCCTCTTCAATCATCTGTGTACCCAGACTGTAAAAACGCTTCACAAATGCACGCAGTGTGAGAGGGTTTTCAACTTCAACTCAGCTCTGATTAAGCACCAAAAGATGCATGAGAGGCATAAAATATCACTAGAGTGTTCAGAGTGCGGTGACCATTTTACTTGCAGATCTAGCCTCACTATCCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026486_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=0.222 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=11.1),PF0009621=zf-C2H2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=13.6)
Main Inclusion Isoform:
ENSGALT00000043039fB14013
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAGTGTAACTGGCCAC
R:
CTTTCCCAAGTCTAGCAGCCA
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]