GgaINT1030526 @ galGal4
Intron Retention
Gene
ENSGALG00000026486 | ZNF322
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:HGNC:23640]
Coordinates
chr4:70163415-70166972:+
Coord C1 exon
chr4:70163415-70163606
Coord A exon
chr4:70163607-70164671
Coord C2 exon
chr4:70164672-70166972
Length
1065 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATA
5' ss Score
6.84
3' ss Seq
TTTTTTTTTTAAATCTTCAGTGG
3' ss Score
7.48
Exon sequences
Seq C1 exon
AGCATTTCAAGGTTGAAGAGTGACTTGTGTGAAAGATGGTAGATCCTGTGAAACCATGTGAGTCTTCTAGCTCTCAGTGTAACTGGCCACAGCCTGAAGAACCATCCCAGAAAGAGGAAGGAGAAACCAAAGAATCAAAGATCAAATACTACCTGCTAACAGTTGTTACAGAAGACCGCCTTAAGGAGCTAG
Seq A exon
GTAATAAGCATATAAGATATGGAAGCATGTAGGTTTTTATACAGGAGGACAGGGAGAAGAGTGTTGAGAATTGGCCAGAAATCCTTCAGGTGCAGGATTTAGCAATAATATGGCCTCATCAGTTGTCTGATCTTTAACATTCCTGAATCTGGCAGTTCTAATAACCTTGGTTCAGGTGTTCATACAAGAAAATCCACTTCACGTCTGGCACCTTACTAAAAAAGAACATGAAAATAGAAATTATGGAGACAGATTTCCATCTTTGTCTTTAAAGCAAGAGGCTTTTGATTTAAACAAGGATAAAAGATTAATCTGCATTAATGCATTAATCTGGGGATTTGCATACATAACTAGATAAAATCCACTTTCTTCCTTGTGTTTGTCCTAAGGCATTACCAAGCAAGATTGTCAAGACTTTTCAAGGAACAGACGTGATGGTTGTAAGTCATATTATTTTTATAGAATAGAATGTAGAAAGTTGTCTGGCTTGCTACATATCTCAGGCATATGGGTATCGGCATAGTAGTAATCCATGTGCTGAATTTTTAATTATTATTTGAAACAGAACATGTTTATTTGAGTATTTGATTCAACCTTCTATGCCTCTCAATTGCAAGAGGTCAAATTAATGGTTACAGTGTCCTCCTGTGTCTTTTAAAGATTGGTAAAATGGCTGTTCTTTCTTTGATAATAGGAAATAATACCAGTGCCTTTGAAAACATTGACCACAGTGGATTTCTACCCCTTTTGTAATATTGAACACAATGAAAACTTGTGGTCTTAGTTGTACAGCTTGTATTCAGTTTAGGATTTCATATATGTATGCATATTTACATTTCTTTCACTGCAATTCTGAATTCTGAGAATTGAGGGTAAGTGATTCACTATCACTAAGGTGTTAAAACTTACGTTTTGATTACATTTTATTTATTTCATATTTTCATACTACTCTGCTAAGAATTCTTAGCTCCACATTGCAGGTGGTAAGGAGTTATATCTGCTGTTTGTAGACAACAGTGAAGTGTTGTTTTCTTTTTCTTCTTTTTTTTTTTTTTAAATCTTCAG
Seq C2 exon
TGGCTGCTAGACTTGGGAAAGAAGTGGAGAATCATGAACAGGAGGGGCTGGTACGTGCAGAAGAGCACAAGGTGTCATCAGGAAGTCAAAGAGAAAACATCTTTCAGATCAATGACCTAGGTTGTCAGAAGGGTGAAAAGTCTCAAAATGCCAGTTTGCAAACAGCCTTTGAGGAGAAACAGACAGCAGTATCTAGGAAGAGATGCTGTAATATGGGAAACTTCCAAGACAATGTGATCTCAGGGAGACCTTCACCAGGACAGAGTACTTATGAGTGCAGTGTGTGCAAGAGATGTTTCAGCCGCAGCTCAAGCCTCTTCAATCATCTGTGTACCCAGACTGTAAAAACGCTTCACAAATGCACGCAGTGTGAGAGGGTTTTCAACTTCAACTCAGCTCTGATTAAGCACCAAAAGATGCATGAGAGGCATAAAATATCACTAGAGTGTTCAGAGTGCGGTGACCATTTTACTTGCAGATCTAGCCTCACTATCCATCAAAAGACTCACAAAAGGGAGAAGAAGCCTTATATGTGTTTACAATGTAATCGGTGTTTCTACCATGCTTCTGAGCTGGTGACTCATGCTCACATGTGAATGTGATCCTTTGGGTCTCAGTAAGCTGGAGCCACAGGAGTAAGAAAGAAGCACCAACCTGTTTAATTTTTTTTTTTTTCACCTGATCTAGCATTAAGTTGTGTGCAGATAATGTCTGAGATTGGCAAAGCAAAGAAATAGGTAAAATCATAAATATCCCAAGCTGGAAGAGACCCTCAAGATCTTTGAGTCCAATTCCTGGCTCCACACAGGACTATCCAAAATTCAAATCGTATTTCTGAGAGCATTGTTCAGATGCTTCTTGAGTTCTGGTAGGTAGCCCCTAATGCAAAGAGTGTGGCTGGAAGATCAGCTAATTGCTAAGGGAGGCCAGTAGCTGAAGAATGAATTTTCCTTCTAACATGTAAGTTTCTGTTAAGATGGAAACAGGAGTTTAAATTTATTTTAAAGATGGCATTTGAGGGAGAAATAGGACATAACTAGCAAAGGTGAGAGCTAGGTACTTACACTGGTACAGTTTCCTCCAGGATGAGGGATGACCATGTGCTAATTACTTTATCTATGCCTGTATGACTTGGTTTAAAATAAATGTTAACTTCTAAGTTTCTCACTGTAGAATCAGGACTAACGTGTCTGGATACTGAAGTTATGGGAGACAGATGTGTTGAGTAGTTTAAAGAGAAATGTTCTGAAAGCCTAGATGTCTCTTTCATTGGCTTTTAAAAGAAAAATATTCTAAAACTGTGCTTTAAAAGTTTTTCACCTTCTAATGGATTTTGGGTTGTGAACTTGCAAGGCATTTCTGAACATTAGCCTTTTGTAATCATCCAGGGTTTCTGAAGGTATCAGCACCTGGTCAAACATCAAAACAAACCATTCTTTTCTGCCCAGTGCTTATAGATCTCTATAAGTCCTTGGCATCAGCATAACATCTTTGATGCTGATGTTAGGAGTCATCTACTAGAAATCTTTAGTTCCCAGCTTATCTAATATCTAGTCGAGGAGAAAGGAATCACTTAAGAATTGGACTTAAAGAGAGACTTGTCAGACCAATGTCTCTGCTGCTATGGAGATCATTGGGATACTCAAACCAAAACAAAAAGAGGACTTCTATTATGCAGTTACACATTTAATGTAAAATTTGGCAGTTACAAAGAATTGAAATGACTGTCGCATTTTCTCTGTCCCCCCCCTTGACTTTCACCAACTGAGTTGTCTGCTAAAGTTGGATCCCATCTTATGGGTCCACAGACATCAGGGTGTTGATCTATGTGACAGTTCCTTCCCTAAAGAAGTTTCATTGTTTTTCAGTGAGATGAATAGATCAGGAGAGAGACTCTGATTCACCAAAGCATGCTGGAGAAGCAGCTATCATTACAGCCTGCTTTCTTGATGTGAGTCCACCTTGCTTAAAAGGGCTGTTTTAGCTTTGCTGTGGACATAATTAGCAGTAATAATGCCAGAAGACTATTTTTATATATTAATAAACATAAAATATGTTAAAGTTGTACTCGTTTTTACCTCCTTCCACAGAACATGCTATCCAAAGTGTCTGGAAAAAATTTTCAGAATCATGAAATCTTGATATTTTAAAAATATTTCTGAGATATCATGGGTATCTCAGGTACCACAGAAGAGGTTGGAAGGGACCTCTAGAGCTAATCAAGTCCAACCCCCATATAATGTTATCTCTGACCAAACAGTCACTTTGTGCACATTTTTAAAAGCCTGAGTTCAGTTAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026486:ENSGALT00000043039:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=NA C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=11.1),PF0009621=zf-C2H2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=13.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCGCCTTAAGGAGCT
R:
ATTGAAGAGGCTTGAGCTGCG
Band lengths:
346-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]