RnoINT0167923 @ rn6
Intron Retention
Gene
ENSRNOG00000042283 | Zfp267
Description
zinc finger protein 267 [Source:RGD Symbol;Acc:2323100]
Coordinates
chr2:122866051-122869616:+
Coord C1 exon
chr2:122866051-122866146
Coord A exon
chr2:122866147-122867451
Coord C2 exon
chr2:122867452-122869616
Length
1305 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTGTCTTGATTTCTTTCAGCTT
3' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTTGCTGTGTCTAAGCCGTACCTGGTTACATGTCTGGAGCAAAGGAAAGAGCCCTGGAGTGTCAAGAGGCAGAAGCCTGTGGCCCTGTTCCCAG
Seq A exon
GTGAGTAGGAGCGCCTGAAGCAAGCACGCAGAGCAGAGATGACCTGTGTGTAAAGCTCTGGTGCCGTGGCATTGCCTTTGCACTGATGCAGTTCTGTGTCCTGTGTCACTGAAGGGAATTACCTACCCTGTGTTCCCCATCCTTTTAAGTCCCCTGAGCCTGGTTGTCCTGCAGTCATGTCTTCGTATATTCACAGTGATACCTGACATCGTCCCCTTCACCTGTGGTGAGCTGTCTAAAAGTGACAGTTCTTTTGTGACCTTTAGAGGCCTCAGAAAGTCCGTGATAGTTCTCATGACCTTAGATTAATGTGATAAAGAAGTTTTCTCTTAACATTTATATATATATATATACATATATATATGTATTTTAAACCATCTTAGCTTTCTATAAACATTATAATGGGGTTTCTATGATTTTTTTTGACCATACACTACTGATTGACAGGTACATAGAGACAAAATTGAGAATTAGTTTTATAGTAAAGACATTTTTAATCATCACCTGTGTTTGTTCCAGATTTTATAAGATAATAGTACTTTTTTCCTCCTTTATATTTCTTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTGTATTTTCAGTTTTGGGAGTAGGCTCCTCATAGCCAATACTGTTTCTAGTTTTAATCTGTGTTTTATTATTGACTGTCAATTAGAAATACTGTTTATTGCAGGACAGTGTAAGTAAGATGAAATGAAATAAGACTGAGTTACACATGTTTATGACCAGTAAAGCTGCACGTGTTTTTATTTGCCTGGATAAAGTACCCCTGCTTTGTTTATGACCGGATGTTTTTTGACTGTACTGTGCTCAATTATCATTTTACCCTGTCCCCGTGAGCTTCCTTGAAAATGACCTTGATTTTGTTATCTGTCTTGGTAAATCTGTTTCCCTATCTGAGAGACAGTTTGATTTCAAGGTAGCTTCTGAGAAGTTTCAATTTTGTTTCTATTTCCACTTAGCCTTTACCCGTAATGAAAAGCACATGAAATGAAATTTATTGTCTTAAGATTTTATTACTCTGATTTATAGTGTTAAGCATATCCAAATTGCTGTGCAACACATCTTTTTAAACTTTTCATTTTACAAAAGGAAAATTCAGTCTTTATAAACAGAAAGGAATAGTATTTCTTTTGCAGCATCCCTGTGGTCAGTGTTAAAGGAGCAGTCAAGGCCTCAGATTTTCCACTATGCACACTGTTGGCTGATGTGCTAATCTAGATTTGTAAGAGCATTCTTCAGAGTCTAGTGAGTGGAATAAGTTTCTGTCTTGATTTCTTTCAG
Seq C2 exon
CTTTGTTTCCTCATCATAACCGAGACTTTTCACCAGAGCAGAACATAAACTATTCATTCCAGGAACTCATCCATGGACCTCGTGGAGATTGTGGCTTTGACAGTTTGTACTTCCCAGAAGAAAGGGAACTTGTAGAGGACGGTGACATCCTGGGAACCTGTTATAACAGGCATGACCCATTTCTGACAGCTGACAACAGCAAAAGCTTTACTCCCAGGAGAGATCAGGAACAAGAAATGGCTCACAAAAACTCTCAGGTTAGGCAAGTTACTAGTGAGGAGCCATGTGGTTCTGTCAGCAAACATCAGAATCAGTCTTTGAAACCTACCTCTTATTTCAAAGATAATTTGGGAACTCCACAAAGGGGTCTACTTCATTCTTCAGCTAATGACTTCAACAATTTCAAATGTAGCTTTGGGTTGAGCTTTCATTCAAACATTTTTGTAGATGGGGAACTTAAAAACAAAGGAAAAAATTCTAAATGTAATCAATTTGAGAACTCCATCATGGAAAATTCATTAGTATATAATCAACAAATAGGTCTTTCATGTGCCAAAGCACAGAATTCCCCTAAGTATGGCAGGTTTTTTACACACCCCATATCACCGAGCCAAAATTCAAGTACAGATATTTTGGAAATTCAGTATATATGTAAGGAAAATAGGAAGGGCTTCGCTGAGGAGTCCACCTTAAGCAATCGCCAGGGCATGTATATTGCAGAGACAGTGTATCAGGGTAATGAAAATAATAGTGACTTAGCCTTGGAGTCCTATCCTGCGAATCATCAGTCCGCTCACTTGTACAAATGTTACAAGTGTGACACGGCCTTCCATCAGTACTCAGAACTCATCATCCACCAGTACATCCATATTCAAGATCAGATCTCCAAGGGTATGGACTGCAGCACGGCTTTCCATCAGAGTTCAAGCCTTACAAAAAGCCACGCTGGAGAAAAGCCCTACAAATGCAAGGAGTGTGGCAAAGCCTTTACCTATTGTTCAAGCCTTAGGCAACATCACCGGATTCACTCTGGAGTCAAACAGCACAAATGCAAAGACTGCGGCAAAGCCTTCTACCATAAATCACTCCTTACGCAACACCAGAGCATCCACGCTGGCAAGAAACCCTACTGCTGCAAATTTTGTGGCAAAGCTTTCAATCAGAGGTCAACTGTTACTCAGCACCAGAGAATCCATACTGGAGAGAGGCCCTACCATTGTAAAGACTGTGGCAAAGCCTTTCATCAAAGGTCGAGCCTCAGCCTACACCAGAGAGTTCATACTGGAGAAAAGCCCTACAAGTGCAAAGAATGTGGCAAAGCCTTCAACCGCAACTCGCTCCTTACTCAGCACCAGAGAATTCATACTGGAGAGAGGCCCTACCATTGTAAAGACTGTGGCAAAACTTTTAATAAAAAATCAAGCCTTACTCAACACCAGAGAATCCATACTGGAGAGAAGCCCTATTCTTGTAAAGACTGTGGCAAAGCTTTTAATCAGAGATCAAGCCTCAGCTTACACCAGAGAGGTCATACTGGAGAGAAACCCAATAAATGCAATGAATGTGGCAAAGCCTTTAATCGTGTTTTTTTCCTCACTCAACATCAGAAAATTCATACTGGAGAGAAGGCTTACCACTGTAAGGATTGTGGCAAAGCATTTAAGCAGAGGTCAAGCCTTACTCAGCACCAGAGAGTTCACACTGGAGACAAGCCCTATCATTGTAAGCACTGTGGCAAGGCGTTTACTCAGAGGTCCAGCTTTACTCGACACCAGAGAATTCATACTGGAGAGAAGCCCTACAAGTGTCAAGATTGTGACAAAGCTTTTAGCCGTAACTTACTTCTTATTCAACACCAGAGAATTCATACAGGCGAGAAGCCTTACCATTGTCAAGACTGTGGTAGAGCGTTTAATCAGAGATCGAGCCTTACTCAACACCAGAGAGTTCATACTGGGGACAAGCCCTTCTGTTGTAAAGATTGTGGCAAGGCCTTTACTCAGAGATCAAGCTTTAACCGACACCAGCGGGTCCATACTGGGGAGAAGCAGTACAAATGTAAAGAATGTGACAGGGCCTTTAAATGCAGTTCCCACCTTGCTGAACACCAGTGCACCTCATTAGGCAGCTGCTTCGAAGACACAAAGTTTCTCCAATATATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042283:ENSRNOT00000067090:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAGAGCCCTGGAGTGT
R:
CAGAACCACATGGCTCCTCAC
Band lengths:
347-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]