MmuINT0179761 @ mm9
Intron Retention
Gene
ENSMUSG00000074824 | Zfp708
Description
zinc finger protein 708 [Source:MGI Symbol;Acc:MGI:3040674]
Coordinates
chr13:67170334-67175895:-
Coord C1 exon
chr13:67175769-67175895
Coord A exon
chr13:67172465-67175768
Coord C2 exon
chr13:67170334-67172464
Length
3304 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTAACAATTTTTCTAACAGGAT
3' ss Score
9.85
Exon sequences
Seq C1 exon
GACCCTCTGTCATTTACAGATGTGGCCATTGATTTCTCTGCAGATGAGTGTGAATGTCTGGACTCTGCTCAGTGGAATTTGTATAAGGAAGTGATGTTGGAGAATTACAGCAACCTTGTGTTCCTGG
Seq A exon
GTGAGGATCACTTTCATTGTGAACTCTTATTTCACTGTCAACATGGGCCTGTCTCCCTGCCTTTGAAGAATATCTCATGGGAGCTTGTGCTTTTGATTTCTTCCTTTTTCTTTTTTTGGGTTTTCAAAACAGGGTTTCTCTGTGTAACTATGGCTATCCTGGAATTTTCTCTATAGGCCAGACTGGTGTCAGACTCAGAAATCTGCCTGCCCTCTGCCTCCTAAGTGCTGGGAATGAAGGCACTCACCACCACTGCCCAGCTTATTGATTAGTTTTGTGTGTCCATTTTAAAAGGAAAAATTAGGGAATTGCTATGTAGCCAAGAAATTCTTTTTCTTCTTGTGTTTTTAACAGGTTTGTTTTCAAAGTATTTTCCTGTGGTGGTAATGTTAGAAGCTCAGTAGCCTGAGGCACAGAACACATGTATTAAAGTGTCTCAGCCGTTAGCATTAATACTTTTTCTTGTATATGAGGTTCAACATCTGCAGGTTGTATATTACATCTAAGCATCCTGTCTTTCAGGAAATGTTTAAAGATAGAATTTTACGAAATCTTTTATCTTCTCTTTTCTTCTAAGCAACAGAACTGGGTGCAAATGTTAATTTCCAGAAAAAAAAATACAGCCAAGCCTCTTGTTCCTTTTCCAAACAGGTCTTGCTTTCTCTAAGCCATACCTGGTCACATTTCTGGAGCAGAGTTCAGATCTGTGGAGTGTGAAGAGGAAGGCATCAGTGGCCATCCATCTAGGTGTGTAGGAATGAGTGAGCAGAGCTCACAAGTGACAAGTCAATTTGTAAAACATGTATTGAGAAGTTGTATTTTGGTGGAAGTCTCTTACTATCAAATGGCTTTTGTGATGTTTACTATAATCCTCCTTTTACCTCAAAAAAGCTTTGCATTTATTTACAGTGGCTGCTAAAGTCCTTTATTGAACTTGTTTTCTTGTGGCTGTGTGTGTAGTGTTCTCATCTGTATACATACTCGCATGTGTATGGATGTGTGTGTTCATTCAGGCTGGCATGTACATTGTCCCTGTGGAGGACCAACTTTGATGTTGAGAATCCTCTTTGATGACTCTTCTACCTTATTCATTGAGGCAGGATCTCTCTGTCAAACTCAGAGCTAGCCTTCCCAGCCCATTTGCTCTAGGGATTTCCCTGTCTTCATCTTCCAAGCTTAGATGACAAGCTGGCCACTCTGCATTTACAAGCATCTAAGTAGCCAAACTCCGGTCTTCATACTTATGTAGCAGGCATGTTGACTGCTGAGCCATCTCCATGGTCCCACTCCTTTTATTTTTCCTGGAAGCATCTAAATTACAACATACTTTTCTTTACTTTCTGTTGAGGAAATATTAAAAAATATTGGCAGGCTTCCCACGCAACCGCCAACCACCTGCCCAGCAACCGCCGACTGTATGGCTCAGCTGGGTAATCTCAACTTGGCCATCTCTCTGCTGTCCCTCCGGCTCTGGATCTACCCGCCAACTCTCCGGCGGGGCCAGAGCTCCCGGGTTCTCTTCACTACCATGCCAGCCCCATGCATTGACCGTTCACCCCACGATCAGCCCATCATAACACCCATTTACCCTGTAGAATCAAAACTCTTAAAGCTTATAATAACCAGTCAGATTAATGTATCAATAAAAATCACAATTTACAGGATGCCAATACGGTAATTTCTGAACCAATTGATAATGATAAAAGCTTTATTCCAATTATTCTAACCTTATGATATCATAACTACCTGTGGCAGGTTAATGCCATGCTGGTTCATGCCTGCCTCCATTTTGACTCCCTCCCTTCCTCCTCTGAGAGGCTCTCTGTCTCTGAAACTCTTAGCTCCGCCTCCCTTTTCCCTGTCTAATCATAGGCCTCCTGCTGTCCTGATGTAATTGAACAGGGAAAATCCTGCAACAACTTTCTATGACTCAGAAAATGGGTACACAATTCTAACAGCCTCAGTAACACAGTAACAGCACAGATGAGCCTCTCTAACTCCATTTACATGCTCATTGGCTAAACTAGTTTCATAAGAGTTTTCCTGTGTGTGTATATATGTATGTGTGTACATGTGTGTGCGCATGACACTGCTCATTTTGAGGTGAGATGATAAAATACAAAGGTTGATTTTCTCCTAACCTGTGGGCTGTGGGGATGGAGATCAATGCTCTTTATCTTTCGAGTTATCTTGCTCTATATCTTATGAGGGTTGGGTTTCTTTCTTTCTTTCTTTTTTTTTTTTTGCCAGTCAATGACAGTATATTACAGTGCTTTGCTTTGATAAGAGTGCAGTCATAGCTACAAACTACACATTTAGATAAACTTTGTTTAGTAGATCTTTGATAATGTTTTAAAAATTTATAGCTCCAAAATTTAATCTCTTTTTGCTACTTTACAACTCTATTTTTTGTTTGATTTTTTTTTTTAAGTCTATGATAACATGCTTAGCTGTAATTAATTACTATATCCCATAAGGACAATATAAGATAAAGAGAGCTATACCATAGGTCTGTTAAGTTACATTATCATTCCCTATTAAAATATTATTTGTAATTTCAAGACACATGCATTTTCTTCCTTCTTTGATTACTTAATAGTTGCTGTAACCTTCTAAATGAGTATTCCCACAAATTGTGTAACTTTTGTGTTTATTGACACATAGTTTACTTAGCTGAGTTTATGTCCCTTCTAGGTAAACTAGAAATTTTTCATAATTTGATTTTTAAGGTATTTATATTATTTTTGGTAAAACCTAACACTGTCTTAAAGATTTCATGTATCGATTTTAAAATGTTATGCAGCACATCTTACACAATTTTATAGCTTTGGAAACTGAAACTGTATACTCAAAAGTCTTCTGTATTTCTACCTCCAACCAATTTATCACATTCAACATTGGCTTCCTGTTTGATAAGTATTCGAATTTTGAATTTTCATGTAAGACCAGAAATACATCTTTAAATAAGGGTTTCTTTCATTTAATAAAATGCCCCTTAGGTGTTTTTTATTTAGGTGTTATATCAAGTTTGACTTTTAACTTTCATAGTTTCCCATTCTTTGTTTGTTTCACATTGTCTTCATAGTCTAAGTTCAGTGGTAGATTATGTTGTTTAAACCTGTAGTATCTGAATGAGGCTACTGGGAATATAGTATGCAAATGTTTATAGTTTCCCATTTATATGATGCTTAATTTTAGGTCAAAATGTAGTCAAAATTTTAAAGTATTTATATTTAGGGTGAGCGGTATGAATATAACATATGGTAGTATACTTTTACTGATAATTTAACAATTTTTCTAACAG
Seq C2 exon
GATCAAAAGCCCATAAATGTAAAGAATGTGGGAAATCCTTTGATAGGAACTCAGTCCTTATTCAACATCAAAGAATTCATACTGGAGAGAGGCCCTACAAATGTGAAGAATGTGGCATGGCCTTCACCGGTCGCTGCATTCTTTCTAAGCACCAGCGAATCCATACTGGAGAAAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTCAGCTGTTCTTCTAACCTTCACCAACACCAACAAATTCATAGGGAAGAGAAACCCTATAAATGCGATGACTGTGGGAAGGCCTTTAGCTGTTCTTCATATCTGTATAAGCATCAGCGAATCCATACTGGCATGAAACCCTACAAATGCAAGGAATGTGGCAAGGCCTTTAACTGTTCTGCAAACCTTATTTACCACCAGAGAATTCATACTGGAGAGAAACCATATAAGTGTGGTGAATGTGGGAAAGCCTTTACCATTTATTCAACATTTATGAATCACCAGCGAACACATAGTGGAGAAAAACCGTATGAATGCAAAGACTGTGGGAAAGCCTTTACTAATTGTTATAATCTAATTCAACACCAAAGAATTCATACTGGAGAGAAACCCTATGCATGTGAAGAATGTGGCAAATCTTTTAACTATTCTTCCCATCTTAAACAACACAAAAGAATCCATACTGGAGAGAAACCATATAAATGTGAAGTGTGTGGCAAAGCTTTTAACTGTTCCGATTATCTTGTTAAGCATCAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGTATGTGGCAAAGCTTTTAGCTTTTCTACATATCTGCATAAACATCAAAGAATCCACACTGGAGAGAAACGCTACAGATGTGAAGAATGTGGTAAAGCTTTTACTAATTATTCAGGGCTTATTGTTCACCGAAGAGTACATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCCTTTAGTGTTCACACATCACTCTCTAAACATCAGAGAATTCATACGAGAGAGCAACCTTACAAATGTGATGAATGTGGAAAGACCTTTAGTGTTCACTCAACATTCTCTAAACATCAGATAATGCATACTAGAGAGAAACCCTACAAATGCAAACACTGCGACAAGACCTTCAAATATCCTTCACCCCTTGTTCAACATGAAAGAATTCACACTGGAGAGAGACCCTACAAATGTGAAGTTTGTGGCAAGGCCTTTACTTCTTCTTCAAATCTTAAATATCATTGGAGACTTCATACTGGCGAGAAGCCCTATAAATGTGAACAATGTGGTAAAGCCTTTAAAAATAGTTCAAATGTCACTCGACACTACAAAATTCATACTAGAGAAAATCCAGATTAATGCAAACACTTTTGTAAAGCCTTCCACAGTTGTTCATTGACAATTCAGCACTAAAGAATTCATATAAAAGAAAAACCTTAGAAATGAAAGAAATAAGGAAAAACCTTTAATAATAGTTCAACCCATATTCAACATCCACCATTACATACTGGAGAGATCTTGTAATAGTGAAGAAGATGGCCGTGTTGAGCGTTCAATACTTATGGAGCATCAAATTTTTTAGAGAAACACTACAAATGCAGGTAATACAGGAACTGCTCATTAACCATGAGTGATTTATAACCAGATGTTATACATGCAAAATGACTTTGGAAGGAACACTGACAAATACATAAAACTGAGAAAACCAAACTGGTTCAGTAAAAAGCACTTTGTAAACAGTGTTGCAACACTTTGCTCATCATGTAAATCTTGAGAGATTGGAGAGAATTATCTATCATAAGAGACAAATTCCAGGAGCTGTATAGGATTTAGCAAGCCACCAAGTGCTGCTCTGAATTCCTAAAGAATTAATACAGAACTCTGAACTCACTAAGAAATGTTTGGTGTGCTATAAAAACTCATTATAGACTTTGGAATCATGCAGATAAGTTTGTGAGGACATCAATGTGTTATAAATTGAAATTATAAGCTCAATTTTAAAAAGTGATAAGATCACTCAACTAGTGATTTTTATCAGTTTGTTTTTTTCCCCCCAAAGACCATAGATACATTATTGGAATATGAAGTTTAGTAACTTCTGTAAATAAAAATAAACTGTTTTAATGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074824-Zfp708:NM_001012449:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: