MmuINT0179761 @ mm10
Intron Retention
Gene
ENSMUSG00000058883 | Zfp708
Description
zinc finger protein 708 [Source:MGI Symbol;Acc:MGI:3040674]
Coordinates
chr13:67069398-67074181:-
Coord C1 exon
chr13:67074086-67074181
Coord A exon
chr13:67071529-67074085
Coord C2 exon
chr13:67069398-67071528
Length
2557 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
3' ss Seq
TTTAACAATTTTTCTAACAGGAT
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTCTTGCTTTCTCTAAGCCATACCTGGTCACATTTCTGGAGCAGAGTTCAGATCTGTGGAGTGTGAAGAGGAAGGCATCAGTGGCCATCCATCTAG
Seq A exon
GTGTGTAGGAATGAGTGAGCAGAGCTCACAAGTGACAAGTCAATTTGTAAAACATGTATTGAGAAGTTGTATTTTGGTGGAAGTCTCTTACTATCAAATGGCTTTTGTGATGTTTACTATAATCCTCCTTTTACCTCAAAAAAGCTTTGCATTTATTTACAGTGGCTGCTAAAGTCCTTTATTGAACTTGTTTTCTTGTGGCTGTGTGTGTAGTGTTCTCATCTGTATACATACTCGCATGTGTATGGATGTGTGTGTTCATTCAGGCTGGCATGTACATTGTCCCTGTGGAGGACCAACTTTGATGTTGAGAATCCTCTTTGATGACTCTTCTACCTTATTCATTGAGGCAGGATCTCTCTGTCAAACTCAGAGCTAGCCTTCCCAGCCCATTTGCTCTAGGGATTTCCCTGTCTTCATCTTCCAAGCTTAGATGACAAGCTGGCCACTCTGCATTTACAAGCATCTAAGTAGCCAAACTCCGGTCTTCATACTTATGTAGCAGGCATGTTGACTGCTGAGCCATCTCCATGGTCCCACTCCTTTTATTTTTCCTGGAAGCATCTAAATTACAACATACTTTTCTTTACTTTCTGTTGAGGAAATATTAAAAAATATTGGCAGGCTTCCCACGCAACCGCCAACCACCTGCCCAGCAACCGCCGACTGTATGGCTCAGCTGGGTAATCTCAACTTGGCCATCTCTCTGCTGTCCCTCCGGCTCTGGATCTACCCGCCAACTCTCCGGCGGGGCCAGAGCTCCCGGGTTCTCTTCACTACCATGCCAGCCCCATGCATTGACCGTTCACCCCACGATCAGCCCATCATAACACCCATTTACCCTGTAGAATCAAAACTCTTAAAGCTTATAATAACCAGTCAGATTAATGTATCAATAAAAATCACAATTTACAGGATGCCAATACGGTAATTTCTGAACCAATTGATAATGATAAAAGCTTTATTCCAATTATTCTAACCTTATGATATCATAACTACCTGTGGCAGGTTAATGCCATGCTGGTTCATGCCTGCCTCCATTTTGACTCCCTCCCTTCCTCCTCTGAGAGGCTCTCTGTCTCTGAAACTCTTAGCTCCGCCTCCCTTTTCCCTGTCTAATCATAGGCCTCCTGCTGTCCTGATGTAATTGAACAGGGAAAATCCTGCAACAACTTTCTATGACTCAGAAAATGGGTACACAATTCTAACAGCCTCAGTAACACAGTAACAGCACAGATGAGCCTCTCTAACTCCATTTACATGCTCATTGGCTAAACTAGTTTCATAAGAGTTTTCCTGTGTGTGTATATATGTATGTGTGTACATGTGTGTGCGCATGACACTGCTCATTTTGAGGTGAGATGATAAAATACAAAGGTTGATTTTCTCCTAACCTGTGGGCTGTGGGGATGGAGATCAATGCTCTTTATCTTTCGAGTTATCTTGCTCTATATCTTATGAGGGTTGGGTTTCTTTCTTTCTTTCTTTTTTTTTTTTTGCCAGTCAATGACAGTATATTACAGTGCTTTGCTTTGATAAGAGTGCAGTCATAGCTACAAACTACACATTTAGATAAACTTTGTTTAGTAGATCTTTGATAATGTTTTAAAAATTTATAGCTCCAAAATTTAATCTCTTTTTGCTACTTTACAACTCTATTTTTTGTTTGATTTTTTTTTTTAAGTCTATGATAACATGCTTAGCTGTAATTAATTACTATATCCCATAAGGACAATATAAGATAAAGAGAGCTATACCATAGGTCTGTTAAGTTACATTATCATTCCCTATTAAAATATTATTTGTAATTTCAAGACACATGCATTTTCTTCCTTCTTTGATTACTTAATAGTTGCTGTAACCTTCTAAATGAGTATTCCCACAAATTGTGTAACTTTTGTGTTTATTGACACATAGTTTACTTAGCTGAGTTTATGTCCCTTCTAGGTAAACTAGAAATTTTTCATAATTTGATTTTTAAGGTATTTATATTATTTTTGGTAAAACCTAACACTGTCTTAAAGATTTCATGTATCGATTTTAAAATGTTATGCAGCACATCTTACACAATTTTATAGCTTTGGAAACTGAAACTGTATACTCAAAAGTCTTCTGTATTTCTACCTCCAACCAATTTATCACATTCAACATTGGCTTCCTGTTTGATAAGTATTCGAATTTTGAATTTTCATGTAAGACCAGAAATACATCTTTAAATAAGGGTTTCTTTCATTTAATAAAATGCCCCTTAGGTGTTTTTTATTTAGGTGTTATATCAAGTTTGACTTTTAACTTTCATAGTTTCCCATTCTTTGTTTGTTTCACATTGTCTTCATAGTCTAAGTTCAGTGGTAGATTATGTTGTTTAAACCTGTAGTATCTGAATGAGGCTACTGGGAATATAGTATGCAAATGTTTATAGTTTCCCATTTATATGATGCTTAATTTTAGGTCAAAATGTAGTCAAAATTTTAAAGTATTTATATTTAGGGTGAGCGGTATGAATATAACATATGGTAGTATACTTTTACTGATAATTTAACAATTTTTCTAACAG
Seq C2 exon
GATCAAAAGCCCATAAATGTAAAGAATGTGGGAAATCCTTTGATAGGAACTCAGTCCTTATTCAACATCAAAGAATTCATACTGGAGAGAGGCCCTACAAATGTGAAGAATGTGGCATGGCCTTCACCGGTCGCTGCATTCTTTCTAAGCACCAGCGAATCCATACTGGAGAAAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTCAGCTGTTCTTCTAACCTTCACCAACACCAACAAATTCATAGGGAAGAGAAACCCTATAAATGCGATGACTGTGGGAAGGCCTTTAGCTGTTCTTCATATCTGTATAAGCATCAGCGAATCCATACTGGCATGAAACCCTACAAATGCAAGGAATGTGGCAAGGCCTTTAACTGTTCTGCAAACCTTATTTACCACCAGAGAATTCATACTGGAGAGAAACCATATAAGTGTGGTGAATGTGGGAAAGCCTTTACCATTTATTCAACATTTATGAATCACCAGCGAACACATAGTGGAGAAAAACCGTATGAATGCAAAGACTGTGGGAAAGCCTTTACTAATTGTTATAATCTAATTCAACACCAAAGAATTCATACTGGAGAGAAACCCTATGCATGTGAAGAATGTGGCAAATCTTTTAACTATTCTTCCCATCTTAAACAACACAAAAGAATCCATACTGGAGAGAAACCATATAAATGTGAAGTGTGTGGCAAAGCTTTTAACTGTTCCGATTATCTTGTTAAGCATCAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGTATGTGGCAAAGCTTTTAGCTTTTCTACATATCTGCATAAACATCAAAGAATCCACACTGGAGAGAAACGCTACAGATGTGAAGAATGTGGTAAAGCTTTTACTAATTATTCAGGGCTTATTGTTCACCGAAGAGTACATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCCTTTAGTGTTCACACATCACTCTCTAAACATCAGAGAATTCATACGAGAGAGCAACCTTACAAATGTGATGAATGTGGAAAGACCTTTAGTGTTCACTCAACATTCTCTAAACATCAGATAATGCATACTAGAGAGAAACCCTACAAATGCAAACACTGCGACAAGACCTTCAAATATCCTTCACCCCTTGTTCAACATGAAAGAATTCACACTGGAGAGAGACCCTACAAATGTGAAGTTTGTGGCAAGGCCTTTACTTCTTCTTCAAATCTTAAATATCATTGGAGACTTCATACTGGCGAGAAGCCCTATAAATGTGAACAATGTGGTAAAGCCTTTAAAAATAGTTCAAATGTCACTCGACACTACAAAATTCATACTAGAGAAAATCCAGATTAATGCAAACACTTTTGTAAAGCCTTCCACAGTTGTTCATTGACAATTCAGCACTAAAGAATTCATATAAAAGAAAAACCTTAGAAATGAAAGAAATAAGGAAAAACCTTTAATAATAGTTCAACCCATATTCAACATCCACCATTACATACTGGAGAGATCTTGTAATAGTGAAGAAGATGGCCGTGTTGAGCGTTCAATACTTATGGAGCATCAAATTTTTTAGAGAAACACTACAAATGCAGGTAATACAGGAACTGCTCATTAACCATGAGTGATTTATAACCAGATGTTATACATGCAAAATGACTTTGGAAGGAACACTGACAAATACATAAAACTGAGAAAACCAAACTGGTTCAGTAAAAAGCACTTTGTAAACAGTGTTGCAACACTTTGCTCATCATGTAAATCTTGAGAGATTGGAGAGAATTATCTATCATAAGAGACAAATTCCAGGAGCTGTATAGGATTTAGCAAGCCACCAAGTGCTGCTCTGAATTCCTAAAGAATTAATACAGAACTCTGAACTCACTAAGAAATGTTTGGTGTGCTATAAAAACTCATTATAGACTTTGGAATCATGCAGATAAGTTTGTGAGGACATCAATGTGTTATAAATTGAAATTATAAGCTCAATTTTAAAAAGTGATAAGATCACTCAACTAGTGATTTTTATCAGTTTGTTTTTTTCCCCCCAAAGACCATAGATACATTATTGGAATATGAAGTTTAGTAACTTCTGTAAATAAAAATAAACTGTTTTAATGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058883:ENSMUST00000109742:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=PU(27.3=18.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(68.2=3.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF0013017=C1_1=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types