HsaINT0186173 @ hg38
Intron Retention
Gene
ENSG00000152926 | ZNF117
Description
zinc finger protein 117 [Source:HGNC Symbol;Acc:HGNC:12897]
Coordinates
chr7:64978736-64981482:-
Coord C1 exon
chr7:64981387-64981482
Coord A exon
chr7:64979537-64981386
Coord C2 exon
chr7:64978736-64979536
Length
1850 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GTTACTTTTATTTCTTTCAGTTA
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAG
Seq A exon
GTAAGTGAGAGTGAATACACAGATGGCACAGAGAAGAGGTCAAAGGCCAAGGAGAAGGCCACAGCTTAAAATGTGATTTGGTAAGCTGTGTTCCAAAGGAAATAGTTTCTGGAAAGCCCGAGTTTTTTTTTATTTTTCTCTCACATAGAACATATTTTGTATTGTTTTTCAATTCTCTAAGGATTCCTCTTTCCCTTTAGTGATCTGTCTTCAATTTCACAGTGAAAGCCAACATCCTCTTCATGGGATATAAAAGACTGCACAATCTGACTGGTTTTTTTTTGTTGTTGTTTTGGGGGACACACAAATATGCATAATTTTGAGAAACTCTATGTTAAACAGTTTTTTAAATTCTCTTTTTGCATCAAGTCTGAAATGTGTGAGTAGTGATTTCTGTTCCATTGGTTTTTTTGTTGTTGTTTATTTTTCTGTATATTCCATTCTGTTTTTACTACTATAGCTTTGAAATATAGTTACATATGTAAGGCATATGCAGTGCCAATATACCTTTTCAGGATTTGGCTATTTTGGATTGGCTTTTTCTTTTTATTTGGCAGGACAGATTTGCTGCTGGTATTATTCTCACTTGACAGCTATTTTCTTCAGGACTTGGACAATGTCACACAGTTAGTTCCCTTCTGGCCTGCAAATTTTCTTGAGAAATTCACTCATTACCTCATAAGACTATGCTTATAAATAACATATCACTTTTATCTTGCAACTCACAATATTCTCTTGTCTGTGACTTTTAAAATTGTGCTTATATATGTTCTTGTTGTAAATATCTTTGTGTGTATTCTAGTTTCTTTGTTAACCTTTTTAATTTTTACATCAGTTTTTCTTATAATTTTTCAGTTCCTTTTTTATATTTTTTACCTCCACAATATCTGTTTTTTGATATTTTTAATATTTTTGTTATCCCAATTTTTATGATTTTTAATAGTTGTCTGTGTTTCTATTTCATTCATGGAGTATTATTCAATTTATGTTAACTTTTTAAAATTAATTTTTTAATGGTTGCTTTCTGAAAATTTTATAATATCTGATAGAGCTATGTTGCCCTAAAATTTTGTATGCATTGTAATCTTTAATTGAAATTTGAACATTAAAAACAAGCTACCTGTCACAGTGTCTATAATGTAGCTTTGTCCTGGCAAAGTCTGAAACCATTTGTCTTAGCTAGAGATCCTGAGAGTCTTTCAAACATGTTCTTAGGATGTGTCTTGTCTGAAATGTTCTAGTTGTTTTTTAGTTAAAAGACTTTATTCATGTTTCTTCTTAATAGTCATCACTTGCCACAACTGTTCCCTGTCTGTAGTACAGTCTCTTTCCTGCTGTAACATTTACCTTTGATCTCAGCAGACTCAAAATGTCATTCCAAAGTATACCACTGTTAATTTCAGCACTTTATGTCATTGGAGACAGAAACCAGTGTCCGCCAAAGCACCTAATAAAGCCAGAAATAAAGATGTGGGTGTGTTATTTTTCTTGTCTGTTGAAAAAGAAAGCAAAAGTTGGTAATGTACTTCTAAAGACACTATGTTATACTGAGGAGCAGAAAGAGCTGTGTTGGGTAAATGTAACCAACTTTTCTCTTCCTTCCATGTGGCTTTTGGAATTGTGATAACCTGGAACACTGCACACACGTAACTCATTTATAAATTTTCTATAAATGCATTTTGGTCAATATGCTCTTGTTACATTTATATGTCTATGAAGGAATTAGAACCTGTGGTATTTTGCTATGCCATCTTGCTTATGTAGTTTCTGTAACTTTATGGGTTAGATTTGTAAAGTATATTCATCTGAGTCGAGCAAGTGAAGTAGTTTGTTACTTTTATTTCTTTCAG
Seq C2 exon
TTATGTTTTATTATTTTGCCCAACACCTTTGGCCAGAGCAGAACATAAGAGATTCTTTCCAGAAAGTGACCCTAAGAAGATATAGAAAATGTGGATATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGTTGAGTGTAAACAGCACAAAGGAGATTATAGTGGACTTAACCAATGTTTGAAAACTACCTTGAGCAAAATATTTCAATGTAATAAATATGTAGAAGTTTTCCATAAAATTTCAAATTCAAATAGACACAAGATGAGACATACTGAAAATAAACATTTTAAATGTAAAGAATGTCGCAAAACATTTTGCATGCTTTCACACCTAACTCAACATAAAAGAATCCAAACTAGAGTGAATTTCTACAAATGTGAAGCATATGGAAGAGCCTTTAACTGGTCCTCAACCCTTAATAAACATAAGAGAATTCATACTGGAGAAAAACCTTACAAATGTAAAGAATGTGGCAAAGCCTTTAACCAGACCTCACACCTTATTAGACATAAGAGAATTCATACTGAAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCATCGACCCTTACTACACATAATATAATTCATACTGGGGAAATTCCCTACAAATGTGAGAAATGTGTTAGAGCTTTTAACCAAGCCTCAAAGCTTACTGAACATAAGTTAATTCATACCGGAGAGAAACGTTATGAATGTGAAGAATGCGGCAAAGCTTTTAACCGATCCTCAAAACTTACTGAACATAAGTACATTCATACTGGAGAGAAGCTGTACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152926:ENST00000610793:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=9.7),PF134651=zf-H2C2_2=PU(64.0=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAAGGAAAAGAGCCC
R:
TTCAGTATGTCTCATCTTGTGTCT
Band lengths:
342-2192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains