Special

MmuINT0179800 @ mm10

Intron Retention

Gene
ENSMUSG00000048280 | Zfp738
Description
zinc finger protein 738 [Source:MGI Symbol;Acc:MGI:3040706]
Coordinates
chr13:67667437-67673093:-
Coord C1 exon
chr13:67672998-67673093
Coord A exon
chr13:67671612-67672997
Coord C2 exon
chr13:67667437-67671611
Length
1386 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
3' ss Seq
TCTCAATCATTCCTCACCAGAAA
3' ss Score
5.56
Exon sequences
Seq C1 exon
GTCTTGCTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCGGCTACCTCTATGCTCCCGG
Seq A exon
GTGTGTTAGGAGGAGGGAATCAGAGAACAGAGTGGGAAATTCTAAGATCTAATATAAAGCCATTAAGACATAATATTGTGGTATAAATCATCTTTTAAAGCTATACTTTTCTGTCTTTTTCTTTGAAAGGAAATTATCTAATGTTAAGGATGCTTTGAATCTCATAAGCTTTGTTTTCTTCCACCATGATATTAACTTGTGTTCCCCAGGACAGCCAAAGATCTGTTATTTCTAAGTAGTCTTTAACTCTGATGTTTATTTTTTAATATAAAATATAAAAAATGCATTTAAAAATGTGTACATACATTCTTAAAAGTGAAGATTTGTCTCTGTCCCTGCCTAGCTCCAAAATGAAAGGGACTGAAACTATAAGATTTATTTGATAAGATTCACAAGACAATTACCTGGCAATTAATGATCAGTTCTAATCTAAGTTAATCTGGCTACCTCCCAGCCAAAATTCTCAGGATACTTGCATTTTTGTATTAGTCTGGCTCTCTGGGCTTTGTGTGTCTTTACATTATGTCTCTCCAGACCCCGTCCTCCAGGTGAATCCTTTCCTTCCCTCCTGTCCCTCTCCTTCTTCTTCTCCTCCCCCAGCCCCAGCCTTCTCTTCTTCCCTGGGCTTGCAGATGTCCAACTCTTTCCTCTCTACAGTTGGTCTTTTGGCTTGTCAGTTTTCTTGGCAAGTTAGAGACTGAAATGGGATCAATATTTACACAAACTTCATAAGAGAAATTCTTAGAATACATATTACGTATCATGTGTGGATGGCAAGTAGATATGAGGCAGAAAAATCAGTGTTTGAATAATACCAGGATAATGTTCACATACTGCTCAAACCCACCATGCCTAAAGATATGCATAAGCTTCTTTCTTGAACTCTTGAAAATTTATTATTGATAACTTCATAAACTAAACTCTATACTAATATATTTATATCTATATCATATATATTTAATATATTATATAATATAGAATATAGAAATATTGTTTGTTCTGGTGTATTCAAAGGTAGACCATTCTATATTTTGTCTTTATCTAGTTATGAGATTTCTGTATTTCTGTTAGGAGCTGATTTGTATATACATAATGGGTTTTCTTAGCTGATATTATGTTTTGCTTACATTTTAATATTCTTTTGATTAATATTTTTGGTTCCATGTTCTAAACAGTCATGCTCTTCTTTTAGTACAAGGTGACATGATTTTCACTTATTCTGTGATTTAACTTAGGCTTCATTGAATACAGGTTTAGAAATTTGAATATAGGTTATCATTTATAAAAAAATGCAACTATGAGTAAATGTTTGTTATTAAAAAGAAGCATTATAAATTTACGGAATTTTGCTCTACCTTCACTAATTTCTCAATCATTCCTCACCAG
Seq C2 exon
AAAGAAAATGCTATAAGTGCAAAGAGTGTGGCAAAGTCTCTGAGTGGACAAAAGTGTTTCAAAATCACCAGATGCTTGATTTAGGAATGAATTACTACAAGTGTGAAGAATGTGCCAAGTCCTTCCATAGTCCATCATTAAGTTCTGAAGAGAACAGAATTCATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAGTGTGTGGCAAGGCCTTCCAACATCCATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGAAAAGCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCATACAGGAGAGAAACCATACAAGTGTACAGTATGTGGCAAAGCCTTCCATTATCCATCAATATTTTCTAAACACAAGCGAATTCATACAGGAGAGAAACCATACAAGTGTGAAGAATGTGGCAAGGCCTTCCACATTTCATCATTTCTTTCTAAACACAAAATAATTCATAGAGGAGAAAAACCCTACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATCCATTCAGGAGAGAAACCATTCAAGTGTGAAGTATGTGGGAAGGCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACAGAAGAGAATCCTTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTAACCATGCAGAAATGCATACAAGAGAGAAACCATACAAGTGTGAAGTATGTCAAAAGGCTTTCCGTTCTCTGTCATCATTTTCTAAACACAAGAGAATTCATACAAAAGACAATTACTATAACAGTGAATTATGTGGCAAGGCCTTCATTTATCCTTCAAGACTTTCTAAACATAAGAAAATTTGTGCAGGAGAGAAGCCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCATGTTGCATCACTACTTTCTAAACACAGGACAATTCATACAGGAGAAAAACTCTATAAGTGTGAAGTATGTGGGAAGGCCTTTTATTATCCATCAAGACTTTCCAACCATAAGAAAATTCATACAGGAGAGAAACCATTCCAGTGTGAAGTATGTGGGAAGGCCTTCTGTTTTCCTTCATCACTATCTAAACACAAGAGAATTCACACAGGAGAGAAACCATACAAATGTAAAGAGTGTGGAAAGGCCTTCCGCTCTCTGTCCTCACTTTCTAAACACAAGAGAATTCACACAGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCCTTCCATTATCCATCATTACTTTCTAAACACAAGATAATTCATACAGGAGAAAAACCCTATAAGTGTGATATATGTGACCAGGCGTTTCATGTTCCATCAAAACTTTCTCATCACAAAATAATTCATAGAGGAGAAAAACCCCACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATCCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGGAAGGCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACCGAAGAGAATCCTTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTACCCATGCAAAAATGCATACAAGAGAGAAACCATACAAATGTGAAGTATGTCAAAATGCTTTCCGTTCTCTGTCATCACTTTCTAAACACAAGATAATTCATAAGGAAGAAAAACCCTACAAGTCTGACATATGTGGCCAGGCGTTCCATGTTCCATCCAAACTTTCTCATCACAAAATAATTCAGACAGGAGAAAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCTGCATTCCATTATTAGTTTCTAAACACAAGAGAGTTCATACAGGAGAGAATCCCTATAACAGTCAAGTATATAACAAGGCCTTCATTTATCCTTTAAGACTTTCTAAGCATAAGAAAATTTGTACAAAAGAGAAACCATACAAGTGTTAATATGTGGAAAGTCGCGCCACTTCCCATCATTACTACTAATACACAAGAGAATGCATACTGGAGAAAAACCCTACAAGTGTGAATATTGTGGCAAGGACTTCCATTATCCATCACTACTTTCTAAACACAAGTGAATTCATACAGGAGAAAAACCATACCAGTGTGAAGTGTGTGGCAAGGACTTCCATGTTTCATCATCACTATCTAAACACGGGATAATTCATATGGGAGAGAAGCCATACAACTGTGAAGTATGTGGGATGACCTTCCGCTTTTCATCATCACTATCTAAACACAAGAGAAATCATACAGGGAAGAAACCCTACAAGTGTGAGGAATGTGGCAAGGCCTTCCATTTTCCGTCAGTACTTTGGAAACACAAGATAAGTCACACTGGAGAGAAACCCTACAATTGTGACTTATAAGGCAAGGCCTTCCATTACTCATCATTACTTTCTAAATATAAGATGAGTCATACAGAAGAAAACCCCCACAAGTGATATATGTGGCAAGGCCTTCCATTATCCTTCAAAACTTTCCAGCCATAAGAAAATTCATGCAGGAGAGAAACCCTACAAGTGTGACGTATGTGACAAGGCCTTCCATTATCCATCATTACTTACTAAACACAAGGTAATTCATACAGGAAAAAAAACCCTCAAGTGTGAAGTATGTGGCAAAGCCTTCCATTATCCCTCACGACTTTCCAAGCATAAGAAAATTCATGGGGCTGGAGACATGGCTCAGCAGTTAAGAGAACTGGCTGCACTTTCAATTGTGCTGTCCTGGGTTCAAGTTCCGGCAACCACATGCTGGCTCACAGTCATGTATGATGGAATCTGTTTCCCTATTCTCGTATGCAGGGGTACATGCAGGCAGAGCACTCATGTACATAAAATAAATGTTATTTACAAAATTGATAGTATGTTGCCTGGTGACTAAAAGTAAAATATACCAGAGACAAACCAACCCTATTAGTGGAAGCATGTGGCAAGGACTTCCAATGTCCAGAACTATTTTCTAACCACAAGAGAAATCATATGGGAGAGAAACCCTCCAATTAGGAAGTATGTAGCCTGTTCCTCTATTGTCCATAATTACTTTCTGAACACAGGAGAATACACACAGGTTAGAAACCCTACAATTGTTAAGTGCAAGTGAACTCCTGTAGAATTTGCCAGATTTTTCATACTCGTTTAATGTGGAAAAGACTTTTCTACAAATATACACCAGTGTTTACACAAGTTAACTCATAATGTGGCAACATTTACAAATACAAAGAATATGTCCAAGTGTTCAACAAAAACTTTAGTGATCATCAAAAATTCATTTTGTCAAGAAAACATACAAATCTAAAGAATGTGGCAAATACATCAGAAGTTCCAAAGCATGATCTGAACACCGGATAATTCCTACTGGAGAGAAACATTACAATTGTGGAGAATGTGGCAAAACCTATTACCAGTCTTCTGGTCTTAAACAACATTCAAGAATTCATCTGTGAGTGAAACCACACAAGTGTGAAGAATGTTCCAAGGTCTTTTGTACTTACTAAGAATTTGTGAAACACCTCATAATTCATACGAAACTGAAATGCCACATGTGGAAAATGTTGCAAACCCTTTATTAAACTTTCTTATATTTCTCAACACAAAGTAGTTCAAATGGGAGTGAAATAATACAAATGTTAAATATTCATAATATGTTAACACTTCTTCAGACACTAAAAGCTCCCTGCTGAATAGAAACCAGATAAGAGTAAGCAATGTGTGGTAAGTAAAGACTTTGGAATCATTCACACAATCATGCCAAAAGTAGAGCTGTCAGATTGTATGTTTGTTCTCTGGATTTGGGGCTGATCTTTCCTGGGTGTCTTTTGTTTCTTCTGTTTTAGAATAAGAATACTTATTCTATACCAGTGAGTAGTAAAAGTAGTCTCTTGTTCTTATGTTGTAAGAGCTCACACAAAGAGATTGCCTTGAGTGTCATGTGACACATGGACTGTGAGCTTTCATAGTGTTGTAATTATTAAATCTTGTATGGACCTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048280:ENSMUST00000137496:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.029 A=NA C2=0.008
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000134865





     
                   









    
Main Skipping Isoform:
ENSMUSP00000121275





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000135683
          









    
Other Skipping Isoforms:
ENSMUSP00000106600, ENSMUSP00000135050
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr7:64979537-64981386 
ALTERNATIVE
HsaINT0186173
(ZNF117)
Human
(hg19)
chr19:35230527-35231515 
ALTERNATIVE
HsaINT0186334
(ZNF181)
Rat
(rn6)
chr2:86891784-86896983 
RnoINT0001259
(AABR07009106.1)
Cow
(bosTau6)
chr18:57703861-57703908 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr22:1300541-1300966 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTGGTCACATGTCTGGAGCAA

				
R: 
TGCCACACACTTCACACTTGT

				
Band lengths: 
358-1744

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"