RnoINT0001259 @ rn6
Intron Retention
Gene
ENSRNOG00000051606 | AABR07009106.1
Description
zinc finger protein 457-like [Source:NCBI gene;Acc:100360380]
Coordinates
chr2:86891688-86897739:+
Coord C1 exon
chr2:86891688-86891783
Coord A exon
chr2:86891784-86896983
Coord C2 exon
chr2:86896984-86897739
Length
5200 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTCAACTCTTACTCAGCAGGGG
3' ss Score
4.82
Exon sequences
Seq C1 exon
GTCTTGCTTCCTCTAAGCCATACCTGGTCACACTTCTGGAGCAAAGACAAGAGCTTTCAGATGTAAAGAGACAAGTGGCCAATTCTAAATACTCAG
Seq A exon
GTATGTCAGGGTAGGATGTCAGAGAACAGTGTGGAAACTCTAAGATCTTATATAAATCCATTGAGATACAATATTCTAGTATAAATAATCTAATTTTAAATTATATATATATATATATATAATTTAATATATATTCTTATTCACCTTATATCCCACTCACTGTCCCCCTCCTGGTCAGCCCCTCCAACAATCCTTCCCTCATTTGCCATCCTTTTCTCTTCTAAGCAGGTGGTTGCTCCCTGGGTATCCTCCCCGCACCCTGGTACTTCAAGATTCTGCAAGTCTAGGCTTTTTCCCACTAAGGCCAGACAAGGCAGCCTAGCTTGTAGTCTATATCCCACATATCAGCAACAGCTTTCAGGATATCCCCCTTTCACATGAAGATAAAGCTGCTCATCTATTGTGGGAAATACTAAAAAATGCCACCATCCCACATTAGGCACCGACTGGCTATTCTCATCTTCTCAGACTCTCTGGCCCGGAGCTCCCGAATCTCTCTACACAGCTTGCTACGATCCCATGGTAGGTCACTACCACGCCAGCCCTATGCATCGACCACCCACCTCGCAGTTAGCTGTCACAAATCCTTGTAACCTGGTAAAATCAACACTGTAGAGGCTTGTAATTTGTCACTCAGATGTATATCAGTTAATTCTCAGCCCACAAAATGCCCAAATGAAGAACTCAGAGCCAACTGATATTGATATAAGCTGCCCACTTACATTGGACAAATTGTCCTGTTAAATCCATCTGTTATATAAGCTACCTGTGGCTAATTAAAGCCACATGGATCTGGGTCTTCCTTCTCTTCCTCCGTCTTCCTTCCTTCTCCTCTCTCCGTCTCTCTTTCCCATCTCTAAAATTGTCAGTCCACTTTTTTTCACTGTCCAATCACAGGCTGTTGCCTTATCTTGGGCCTGCTCTTACCCGCATATAGACAGCAACCCACATTTCCCCCTTTTTGTCCAGTTAAAAGGCTCTTTCCTCTCAAATATAAATTGAACACAATTATTACCATTTGTAAATTATAAAGTATAAGATACACCTAACACCCAGTCCATCATTTTTGTCAATTAAGTAGAACACTCAGTTATCTATCCTAACTTAAGAAAGGCTTAAAATCCGTATGTTATGTCCTGGCTAGCTTGTATACTATCTGAACACTATCCAGTTAAATATGTTTGCTCAATACTAAATAGCCTGGGTAGGCTATGCAACTATAATTAGTCTTTAACCCCACCAGAAACCTGAGAACAACCAATACTCCCTGAAAATATAGGAAGCCTAACACAGCTTCTAGAACCAAGACAAGTTGTAGAGACAACTGCCTACCTACACAGCCCCAGTATGTCAGGAAGTTGGAGCATCACTCTTCAGACTTGTGGCCCAGGAATCTGACAGACCTTAGTGAAACAGGAATTATTAAGAATTAGCTTATTCTGTCTTGGTAGAACTAAGGTGTCCTAACCTATAATTTGTGTCCTTTTGAGGACAGTACAGGTCTGTAGGAGAAATAGGCAATTTCTGCCCTGTGGCCATCTGACCACAATGTACCTCACCTGCAAGTACATGCTCAGTTTCTTCTTTGAATCCACAAATGGGGAGCTGTTAGGAGCAGATATGTCTCAACAAATGATAAATAACATTAAATGTCACATTCTGTGGATGTTTGACATTTTTGAAAACTATCTATCTATGTAAAGTAATCTGGACTGTTGTCCATAACTACCCTCAACTGTTTCTAAATCAAATATCTTGTAAGAACCCTAGCAGTTAACTCAGAGCCAAGAATTTGCTATGTGGCCCTTAACTTGTATTGCTTAATCATTCCAGATTAATTTATAATAACAGTTACGGAAAGACTGGGTCTAAGCCTTGTATTGTTAAATTTATTGCATAGGCACAGTGCCTATATGAGAGTAAGAATATTAATCTCGATTTTACATCAATAAGAAATTCATACCAATGACAACCTTAAATTTGTATCAAATAAATTCTGTACCAAAGTAAGGAATTATGACTTCAACTTAGTAACTATTATAAATATTTCTATCAAATGAGATTATGGCTACATAATCAATTCTAGCTCTTCCCTCCATTTTCAAATCATGACCATTGTTAAATTCCCCAGAAAGAATAACTTCCTCTAGACCGATAAGGCAAGAAAACAGGGCAATGACTCTTCATGACTACTTCTAGCTGTATATGGGTCTTGAGATATTTTTGAGTGGGGAATAGGGAGAATCATTGTTTGGCCTTAAGAAGGCCACACCAACAATTGTTGTAGTCACTGATATCTGTCCTAACTGGATCTGGCTAAAAGTCCCTGAGATCAGGAGTTTAAGCAGGTCAGTTCAGCATGTTTGGCGATGAGACTCACCAAAGTGTACATTCTGTAATATACAAAACAATACAATCTCAAAACAAAATTTAAGTATCATCAAGATATCTGTATGGGTTGCATCAGTCTGTTTAGGGCATACAGACTGGTTAGGATGAAATTCTGCTCCTTTTTGTTTTATTCTCTTGAATCTAGTTTTTCCAGGGGTCTCCCTCTATCAAATTTGATCCATATAGCTCTGGAAGATGTCCAGAGCCTAATCACCTTTTCTAAAAACAGAATGACTAAACCTTTCTCCCAAATCAGCATATCCTTCAGCCAGCCACGAGAAAAGCTTGTATCTTGTATTCTCTCCCAGAGAAATAATATAACTGCAAATCTCAAAATCACACCCATTTTGAATTAAAAAAATTCCAAAGCCAATGAGGTAAACTAAAGTGCTGTGTGAGGCTATTCGCAGGCTTCTCTGATTTGTCATGCCAGGAAAGTAACCCAAAATTCCCATGCCACCCACATTAGAGAATATGAGTTTCCTGTAGGCTGTATTATACCGTTATCTGTTATGCTCTCTACCTGGAGCTGTAGACTTATATTTATTAATACCTTTTATAGTAGGTAATTATCACTGCTCTCTACTTGGAGTCAGTGACTAATTTTTCCCTATCCTAGTTCTGAACTGCAGGTGAAATTCCCCATATGATTCAGACAAACTCTGTATATAAATTTTTCTTAAAAATAAACAAACCAGACTTTGAATGAAATCATACTCCAATCAACATCTTCTAAGGAAGCAGGCAGCTTCCGTTCTCCAGCTCTCTGACTCAGAGAAGCCATCTTGTTTGTTTTCACATTAGGGAACCTCAGAGCCTATGAGCAGAGACTCCCCCTGTGTTTCTTTGTTTTAAGGTTCTTGCACTTGAGTCCACATGATTTGTCTCAGGGCTACCTTTCTCTCCCTTAGAAAATAAAACTCTAACTCCAGACCGATAATCTTAAATTTCTAGTGAATTCTTGCCTAACAGGTTGCTACATATGAGCCATGAGGCCTAGGTCCAGCCCATGTATGTTCTTTGATTGGTGGTTCAGACTCAGAACCCCAAGGATCCAGGTTAGTTGACTCTGTTGGTCTTCCTGTGGAGTTCCTATCTGCTTTGGGTCTCACAATCTTTTCTCCTATTCTTCTGAGCAGAGACTCCCCCTGTGTTTCTTTGTTTTAAGGTTCTTGCACTTGAGTCCACATGATTTGTCTCAGGGCTACCTTTCTCTCCCTTAGAAAATAAAACTCTAACTCCAGACCGATAATCTTAAATTTCTAGTGAATTCTTGCCTAACAGGTTGCTACATATGAGCCATGAGGCCTAGGTCCAGCCCATGTATGTTCTTTGATTGGTGGTTCAGACTCAGAACCCCAAGGATCCAGGTTAGTTGACTCTGTTGGTCTTCCTGTGGAGTTCCTATCTGCTTTGGGTCTCACAATCTTTTCTCCTATTCTTCTGTAGGAGTTCGCAAGCTCTATCCACTGGCTTTGGGTGTCTGTATCTGTCTGAGTCAGCTCCTGGGTTGAGACTATCAGAAGACTACATGCTCGTTCCCATTTAAAAATCTAATTTTCTGTCTTTTTCTGTCAAAGGAGGGCATAATTTAACATTTAGAATGTTTTGAGTCTCATTATCTTTGATTTCTTCTACCATGAGATTAACCTGTGTTTTCCCTGGCAGCCAAAGCTCTGTCATTTCTATGTAATCTTTAACTTGGGCATTTATTTATTTATTTTTTGTAAGATATATGTACATGCATTTTTAAAACTGTTTTTAAATAGAGTTTTCTCTATCTCAGCTAGCTCCCACATGAATGAGACAGAGACTCTAAGATTTACTTGGTATGCTTTACAGCACAGTTACTGGAACATTAATAATTGGGTCTAATCCTCTAAGGTAATCTGGCTAGTTCCCAGGCAAAGTACCCATGACGTTTGCATTTTAGTACTTGTCTGGCTCTCTGAGCTTCAGGGGATTTTCCATTATTTTTGTCTGGACCCCTTCCTTATAGAGAACACCCGCCTCCCACCCAACCTCTCTGTTCTTCCCTGGGATAGCAGAAGTGCAGCATGTTCTCTCTTCAGCCCAGCCATTGGCTGATCAACTTTTATTGACAAGTTAGAGCATAAATGGGGAACAATGTTTACACAAACTTAAGATGAGATTCTAAGAATGAGCACTACAATGCCATGTGTGGGTGGCACAAACATATGGGGGCAGAAAAAACAAGCATTTGAATAATACATGGATAAAATGCGCAAAACCATTATGCCTAAAGATATGCATAAAACTCTTTTCTTGAATCTTTAATGTTTTTAAGGAAAGTCTTCTTCAGTCACCTTTCAAAACTTCCAAAACAAAACTCTCTACTTAGACTATAGATATAATATTATATATATATATACTATATAAATATTGTTTATTCTGGTGTTTTCCAAATTAGACTAATTTATCCTTTGTTTTTAAGCTACTAGTGAAATTTGTGTCTCTTTAAGGGGCTGATTTGCATTTGCATAATGCCATTGTGGTTTTTCTTTGTTGATATTATGCTTTTGTACATGTTTGATTTTGTTTAAAATTCTATTCCCTCCTTGCTCTATGTTGCCATAGCCTTTTTACTTCAAGGAAGTCTACATGATTTTCACTTATTCTGAGTTTTAATTTGTACTTTACTGACTTCAGGTACAGAAAATTGAGTGTATCTTATCATTTATACAGATAAATGCGAGTATGAGTAAATGTTGGTTTTTAAAAAGACAATCAGTATAAATATACAGATTTTTGCTCTGTTTTCATTCTTTTCTCAACTCTTACTCAGCAG
Seq C2 exon
GGGGAAAATACTATATCTGCAAAGAATATGGCAAAGTTTTTGAGGGGAAAAAAGTATTTCGAAATCACCAGATAATTCATTTAGGAATGAAGCCCAACAAGTATGAAGAATGTGGCAAGTCCGTCCGTTTTTCATCCCTACTTTCTGAACACAAAAGAATTCATGCAGGAGAAAAACCCTACAAATGTGAAGTATGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACATAAGGTAATTCATATGGGAAAGAAACCCTACAAGTGTGAAATATGTGGCAAGGCCTTCAAATTGCCATCAAGGCTTTCAAAACATGAGAAAATTCATATAGAAGAGAAGCCATACCAGTGTAAAGTATGTGGAAAGGCCTTTCGCTCTCCATCATTACTTTGTGAACATGAGAGAATTCATACAGGCGATTTACCCTGCAAGTGTGATATATGTGGCAAGGCCTTCCGTTATCCATCATTACTTTCAAAACACAAGGTAGTTCATACAGAAGATAAACCCTACAAGTGTCAAGTATGTGGAAATTTCCTCCGCTCTCAATCATCCCTTCATGAACACAAGAGAATGCATATGGGAGAGAAACCCTACAAGTGTGAAATATGTGGCAAGGCCTTTGAATATCCATCAAGAGTTTTAAAACATAAGAATGTTCATTCAGAAGAGAAACCATACAAGTGTAAATTATGTGGAAAGACCTTCCGCTCTCCATCAGCATTTCGTGTACACAAGAGAAAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051606:ENSRNOT00000077162:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=10.3),PF0013017=C1_1=PU(68.0=13.4),PF134651=zf-H2C2_2=PU(38.5=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]