HsaINT0186334 @ hg19
Intron Retention
Gene
ENSG00000197841 | ZNF181
Description
zinc finger protein 181 [Source:HGNC Symbol;Acc:12971]
Coordinates
chr19:35230431-35233774:+
Coord C1 exon
chr19:35230431-35230526
Coord A exon
chr19:35230527-35231515
Coord C2 exon
chr19:35231516-35233774
Length
989 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTTTTTTGATGTATTTCAGATT
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTCTTTCTGTAACTAAGCCATATGTGATCACGTTATTGGAGGATGGAAAAGAGCCCTGGATGATGGAGAAAAAACTGTCAAAAGGTATGATTCCAG
Seq A exon
GTGAGTCATGGTGAACGAGACAAAGGAAGATTTTGTTAAAAAGGGTCCCAAACTCTTTATAGTGAGTTTATAGTGAGTGTGGAGGCATTTTAGGTATACTGTTTTCAAAGATCTCAGATAGAAATGAAAAATTGTGGGATATTTAGCTTAGATTTTCAAAACAATTGTTCCTCTATCCCAAATTATTATCTGTATCACTCATGTCATCCAATCAAGGTTAGAGGTTTTTGCCTTCATAATAATTCAATTGTTACTCTATTCATAACAGTAAGGCAAATTATTCTTTCTTAAATCTACTTAAAGAAAAACATACTGATAGTTTTAGGCTAAGAAAAGCTGTCAATTAGATGGGAAATCACTTTTCTAAAGCTGAGCGTTGTAGATGAAATATGAACATATTAGAGGAAAAAATGAACATATATAAATATGTTTCTAGGAATATTTTCTAATGTCCAATAAATGACATGATTCACACAGTTTCTTCATAACTTCAGAAAGCCTAAATCTTTGTCAGCTATAAAGAGCATTTAGATTATTGTGTTTTTACTGCAACTGTTTAATAACATCAATTCTGTATTTTAAGCATGTTAATCTGGCAGCAAATTGAGATTAATTGAATGTTGGAGAAAAAGGCTATGAGACAAAATGCAATCTTTCATACATGCATATAGGCACAAAATGATGGCTTGGAATCCAGAATGCCTTCCACATTTTATTTCTGATAACTTCCTTTTTTTCCATACTATTTCATCCATTACATATATTTTTCCCATTTCCATTATCACACTGTGTTCCCACTTCTGTGAACTCTGTATTCTCTGCTCCATTTGAGCACTGTTCAGAAATCATTGAAATATTTCAGTTGTCAGAACTATGTGTTTTCTGGGGGCTTCATTTCTAATCCAGTTCTCCTAATTCCAATTTAGAAGTTTCTTTTCAAATAGTTAAAAAAAAACAAAACAGTGCTTTGCTTTTTTGATGTATTTCAG
Seq C2 exon
ATTGGGAATCAAGATGGGAAAACAAGGAATTATCAACAAAGAAGGATAATTATGATGAAGATTCACCCCAAACAGTAATAATAGAAAAAGTTGTAAAACAAAGTTATGAATTTTCAAATTCTAAGAAGAATTTGGAATATATAGAGAAGTTGGAAGGGAAGCATGGAAGTCAGGTAGACCATTTCAGACCAGCAATTCTCACCTCTAGAGAAAGCCCCACTGCAGACAGTGTTTACAAATACAATATATTTAGAAGCACCTTTCATTCAAAGTCTACTCTTTCTGAACCACAAAAAATTTCTGCTGAAGGGAATTCACACAAATATGATATATTAAAGAAGAACTTACCAAAAAAGTCAGTTATAAAAAATGAGAAAGTCAATGGTGGAAAGAAACTTTTGAATTCTAATAAAAGTGGGGCAGCCTTCAGCCAGGGCAAATCTCTTACCCTTCCCCAGACTTGTAATAGAGAGAAAATCTATACATGCAGTGAATGTGGGAAAGCCTTTGGCAAACAGTCAATCCTCAATCGCCACTGGAGAATTCATACAGGAGAGAAGCCCTATGAATGTCGTGAATGTGGGAAGACTTTTAGCCATGGCTCATCCCTTACACGACATCTGATAAGCCATAGTGGAGAGAAACCTTACAAATGTATTGAATGTGGGAAGGCCTTTAGCCATGTCTCATCACTTACTAACCATCAGAGCACTCACACTGGAGAGAAACCATATGAATGTATGAACTGTGGAAAGTCTTTTAGTCGTGTGTCCCATCTTATTGAACATCTAAGAATTCATACTCAAGAAAAACTCTATGAGTGTCGTATATGTGGAAAGGCCTTCATTCATAGGTCATCTCTCATTCACCATCAGAAAATCCATACTGGAGAGAAGCCTTATGAATGTAGAGAATGTGGGAAAGCTTTCTGCTGTAGCTCACACCTTACTCGACATCAAAGAATTCACACTATGGAGAAACAATATGAATGCAACAAATGTCTGAAAGTCTTTAGTAGCCTCTCATTTCTTGTTCAGCATCAGAGTATTCATACTGAAGAAAAACCCTTTGAATGTCAGAAATGCAGGAAATCCTTCAACCAGCTTGAATCACTGAATATGCATTTGAGAAATCACATTAGATTGAAACCCTACGAATGCAGTATATGTGGGAAAGCCTTTAGTCATAGGTCATCCCTGCTTCAACATCACAGAATTCATACTGGAGAGAAACCTTATGAATGTATTAAATGTGGGAAGACCTTCAGCTGTAGTTCAAACCTTACCGTACATCAGAGAATTCACACTGGAGAAAAGCCATATAAATGTAATGAGTGTGGGAAAGCTTTTAGCAAAGGCTCAAATCTTACTGCCCATCAAAGAGTACATAATGGAGAGAAACCCAATAGTGTGGTAAGTGTGGAAAAGCCTTTAGACTATATGAATCACTATACATGTGAGAAATCTTACAGAAGAGAAACTGTATGAAGCAGTGGTTATCATGGTAAATTTCCTAGATTCTCCCTTATTTAACATTAGAAAAATTTATACTGGGGAAAGTCTTATGAATGTGGTGAATATAGGAAGACCTTTTAGCAAAGATGCAGGCCAGTTTGTTTATTAGACTTTATACTGTAGAGAAATCATATGAAGACCATAAATGTGGGAAAGCCTTTGTCAGTATTAATCCCTTAATTGACATAAGTATACTCACACTAGGATAAAACCCTGTACATGTAGCAAATGTGGGAAAGACTACAGACAATAGGAATCTTTTACAAACTCCTACAGGAGAGAAGCTGTATGAATGTAGAAAATTTAGAAATTGAGGGAAGTCTTCAGTTCCAAGTATATCCCTTATTCTACAGCAGAGAACTCAAAATGGAGAGAAATCTCATTTAAGAGATGTAGCAAAGTGTTCACTAAGAGTGTTTATCTTGGTACACATCAGAAGATTAATGGTAGAACAACCTGAAGGATTTAGGAGTTATGTGTAAATCTTTGCAGTCATGCTATTTGTAAACTGGATTCTACAGGAGAGCAAATAAACATTATAATAAAATATGCATTTCTTAGAGCAGTAGCTTGCAGTTTCAGTTGAGTTCTACTTAGAAATTCTTTTTAGCTAGTGGGCATGTGAAGATATTTAGTCACCCAGAGGAGCCAGTAAGTGTTATAATATTGAAAATTAAAGCTGCAAAAGAAATAAAGTGATGTTAATAAAAGTTTTGGCATCTAATAAAATCATTTTGTATATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197841-ZNF181:NM_001145665:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGAAAAGAGCCCTGGA
R:
TGTGGTTCAGAAAGAGTAGACTT
Band lengths:
349-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)