Special

MmuINT1035722 @ mm10

Intron Retention

Gene
ENSMUSG00000058093 | Zfp729b
Description
zinc finger protein 729b [Source:MGI Symbol;Acc:MGI:2145180]
Coordinates
chr13:67589443-67595311:-
Coord C1 exon
chr13:67595216-67595311
Coord A exon
chr13:67593916-67595215
Coord C2 exon
chr13:67589443-67593915
Length
1300 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCTCAATCGTTTCTCCACAGAAT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTCTTACTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCAGCTACCTCTATGCTCCCAG
Seq A exon
GTGTGTCAGGAGGAGGGGATCAGAGAACAGAGTGGGAAATTCTAAGATCTAATATAAAGCCATTGAGACACAGTATTGTGGTAAAAATCATCTTTTAAAGCTATATTTTTCTGTCTTTTTCTTTGAAAGGAAATTATCTAATGTTAAGGATGCTTTGAATCTCATAAGCTTTGTTTCCTTCCACCATTAGATTAACTTGTGTTCTCCAGGACAGCCAAAGCTCTGTTATTTCTAAGTAGTCTTTAACTTGGATGTTTTTTTTTTTATATAAGATATATGGACATTCATTTTTAAAAGTGAAAATTTGTCTCTATTTCTGGCTAGCTCCAAAATGAATGAGACAGAAACTTTTTATAAGATTCACAAGACAATCACTGGGTAGTTAATGATCAATTCTAATCTTCTAACTTAATCTGGCTACCTCAAAATAATCAGGATACTTACATTTTTGTACTGATCTGGCTTTCTGGGCTTCAGGTGTCTTTACCTGATGGCTCTCTGGAAGTGACTCCTTTCCTTCCCTCCTCCACCCCACACCCTGCCCTCCCTCTGTCTCTTCTTCCCTGGGCTGGCAGATGTCTAACTCTTTCTTCTCTAGAGCTGGTCTATTAGCTGATCAGTTTTATTGACAAGTTAGATAATAACATGGAAACAAACTTTACACAAACTTGATAAAGGAAATTCTTAGAATAAATATTACAGTACCATGTATGGATGGCAAGTAGATACCAGGCAGAAAAATCTTTACATAGTGCGCAAACCCACCAAGCCTAACGATATGCATAAACTTCTTTCTTGAACCACTGAAATTTATTTTTCAAAACTTTGAAACAAAATTGTAATGCATGTATGTATATCATACTCATATATATATATATATAAAATATGTAGAAATATTGTTTATTTGGGTGTTTTCAAAGTTAGACTATTTTATACTTTGCTTTTATCTAGTCATAAAATTTCTGTATTTGTGTAAGGGGCTGATTTGTGTTAACATAATGGGTTTTCTTTGTTAATTTTATGTTTTTGTTTCATATTTGACTTTGATTAACATTCCCTTGTTTCCATTTCTGTGTTGTCATGGTCTTCTTTTGTCAGTGGGAGGCTACTTGATTTCCACTTCTGTTTTAAATTAGGCTTCATTGAATACAGGTGTAAAAAAATGAATGTAGCTTATCATTTATAAAGACAAGTGCAAGTAAGACAAGACAAGTGAGAAATGTTGGTTTTTAAAGAGAAACATTATAAATTTACAGAATTTTACTCTGCTTTTATTAATTTCTCAATCGTTTCTCCACAG
Seq C2 exon
AATGCAGAGAATATGGAAAAGTTTTTGAGTGGTCCAAAGTGTTTCAAAATCACCAGATAATTGACTTAGAAGTGAAGCCCTACAGGAGTGAAGAACGTGCCAAGTCCTTCCATATTCCATCATTAAGTTCTGAAGAGAGCACAATTCATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAGTGTGTGGCAAGGCCTTCCAACATCCATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGAAAAGCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCATACAGGAGAAAAACCATACAAGTGTGAAGTATGTGGCAAGGCCTTTCATTATCCATCAATACTCTCTAAACACAAGCGAATTCATACAGGAGAGAAACCATACAAGTGTGAAGAATGTGGCAAGGCCTTCCACATTTCATCATTTCTTTCTAAACACAAAATAATTCATAGAGGAGAAAAACCCTACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATCCATTCAGTAGAGAAACCATACAAGTGTGAAATATGTGGGAAGGCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACAGAAGAGAATCCTTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTACCCATGCAAAAATGCATACAGGAGAGAAACCATACAAGTGTGAAGTATGTGAAAAGGCTTTCCGTTCTCTGTCATCACTTTCTAAACACAGGAGAATTCATATGGGAGATAATTATTATAACAGTGAATTATGTAGCAATGCCTTCGTTTATCCTTCAAGACTTTCTAAACATAAGAAAATTTGTAGAGGAGAGAAGCCCTACAAATGTGAAGTATGTGGCAAGGCCTTCCATGTTTCATCACTGCTTTCTAAACACAGGACAATTCATACAGGAGAAAAACTCTATAAGTGTGAAGTATGTGGGAAGGCCTTCTATTATCCATCAAGACTTTCCACGCATAAGAGAATTCATACAGGAGAAAAGCCATACAAGTGTGAAGTATGTGGAAAGGCGTTCTGTTTTCCACCATCACTATCTAAACACAAGAGAATTCACACAGGAGAGAAACCATACAAGTGTAAAGAATGTGGGAAGGCCTTCCGATTTCCATCATCACTATCTGCACACAAGAAAATTCATACGGGAGAAAAACCCTACAAGTGTGAAGTTTGTGGCAAGGCCTTCCATTATCCATCATTACTTTCTAAACACAAGATAATTCATACAGGAGAAAAACCCTATAAGTGTGACATATGTGACCAGGCATTTCATGTTCCATCAAAACTTTCTCATCACAAGATAATTCATACAGGAGAAAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCATTATTCATCACTACTTTCTAAACACAAGATTATTCATACAGGAAAAAAACCCTACAAGTGTGAAGTGTGTGACAAGGCCTTCCATTATCCATCAAGACTTTTTAGCCATACAAAAATGCATACTGGAGAGAAACCATACAAGTGTGAAGTGTGTGGAAAGGCCTTCTGTTCTCCATCATCACTTTCTAAACACAAGAGAATTCATAAAGTTGAAAAAGCCTACAGTTGTGAGATTTGTGGAAAAACCTTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATACAGGTGAGAATCACTATAACAGTGAGGTATGTAGCAAGTTCTTTGTTTATCCTTCAAGACTTCCTAAACATAAGAAAATTTATAAAAGAGAGAAACCATACAATTGTGATGTATGTGGGAAGGCCTTCGATTATCCATCAAGACTTTCTAAACATAAGAAAATTCATACAAGAGAGAAACCGTACAAGTGTGATGTATGTGGAAAGGCCTTCCACATTGCATCATTACTATTAGTACACAAGGGAATTCATACTGGAGAAAAACCCTACAAGTGTGAAGATTGTGGGAAGGCTTTCTATTATCCATCATTTCTTTCTAAACACAAGAGAATTCATACAGGAGAAAAACCGTACCAGTGTGAAGTGTGTGGCAAGGCCTTCCATGTTTCATCATCACTATCTAAACACAGGATAATTCATACAGGAGAGAGACCATACAAGTGTGAAGTGTGTGGGAAGGCCTTCCGCTTTTCATCATCACTATCTAAACACAAGAGAATTCATACAGGAAAGAAACCCTACAAGTGTGAAGAATGTGGCAAGGCCTTCCATTTTCCATCATTGCTTTCTAAACACAAGATAAGTCATACTAGAGAAAAATTCTACAATTGTGACTTATGTAGCAAGACCTTCCATTATCCATCATTACTTTCTAAACACAAGATGATTCATATGGAAGGAAAACCCCACAAGTGTGATGTATGTGGTAAGGCCTTCCATTATCCTTCAAAACTTTCCAATCATAAGAAAATTCACACAGGAGAGAAACCCTACAAGTGTGAAGTATGTGGAAATGTCTTCCGTTTTCCATCGTCACTTTCTGAACACAAGAAAACTCATACTGGAGAGAATCCATACAAGTGTGAAGTATGTGGCAAGGCCTTCTGTTCTGCATCATTACTTTCTAAACACAAGATAATTCATATAGGAAAGAAGCCCTACAAATGTGAAGTGTGTGGCAAGGCCTTCCATTATCCGTCACGACTTTCCAAGCATAAGGCAATTCATGGTGCTGGAGAGATGTCTAGAGTTGAGGGCACTGGATGCCCTTCCAGAGGTCCTGAGTTTAATTCCCAGTAACTACATGGTGGCTCACAACCATCCGATGCCCTCTTCTGGTATGCAGATGTACATGCAGATAGAGATGTCATATACATAAAATAAACAAATCTTTAAAAAATATTGATGGTATATTGCTTGGTACCAAAAGAAAAGAAAAAATGAAATTCACACAGGAGAGAAACAGTAGTAGTCTGAAGTATGTAGACGGGCCTCAAATTTCATCATCACTTTTGGTACAGAAGAAAATTCATACAGGAGAAAATCCCTACAAGTGTGTAGTGTGTGGCAAGGATTTCCATTGTCCAACATTACTTTCTAAATACAGGAGAAGTCACTCAGGAAAACAAAAAAACAAACCTACAAGTATAAAGTATGTATCCTGGCCTTCTGTGCTCAACAAAAACATTAGGGATCATGAAAGAATCCATTCTGCAGATAAACCATACAACTCTAAAGAATGTAGCAAATACTTCAGAAGTTCCATAGCATATGCTGAGCACAGGATAATTCCTACTGTACAGAAATATTACAATTGTGGAGAATGTGGCAAAAACTATTACTTGTCTTCTGGTCTTAAGCAACATTCAGGAATTCATCTGTTAGAGAAACCACACAAGTGTGAAGAATGTTCCAAGGTCTTTTGTACTTACTAAGAACTGTAAAACACCTCAGTTCATACAAGACTGAAATGCCTCATGTGAAAAATGTTGCAAACCCTTTAATAGACTTTCTTGTATGTCTCAACACAAGGTACTCCAAGCTGGAGTGAAATAGTACAAATGTTAAAAATATTCACAGTACATTAACACTTCTTCAGACACTAAGTTATCGAAAGCTTTCTGCTGAATGGAAACTATGTAAGATTGAGAAATGTGGTAAATAAAGCCTTTGGAATCATTCACACAACCATGTCAAAAATACAAATGTCAGACTGTTTATTCTCTGGATTTGAGGCTGATCTTTCCTTGCTGTCTTTTGTTTCTTCTGTTTGAGAATCAGAACACTTCTATACCATTGTTGCAAAAGTAGTCACTTGTTTTTATGTTGTAATAGATCACACATAAGAGATTGCCTTGAGTCTCACATAACACATGGACTGTGGTCTCATAATGTTGTAATTATTAAATACTATATGGACCTTTCAAGTTGTAGGCTATTTTACTTAGGAGGTGAAAGTAAGGTTGGGGAAAAGGGAAGAAATGTTGTGATTAAAGCTCTGTGGCTAAGGCTAGCATGAGTTTGGGAACAAACTTAAAAGACAAGACCCATACCCATGTTAGTATTCCAAGTACCCACAAAATAGGTAATTACCTCTGCAGATTTTTCTCTGACCTCCATGTGTGGGCTCCCACATATACATACATACATACACCCAGACAAAATAAACCTAAATTATGTTTTGGAATTATGCTTGTGTTTTATGCAGACAGGGGTCAAGAATTAATGCTTATATCTTAATTCTCAGCTACTACTTGAGTATCATATCTGTCTCCATTCCACCATGTTCCCTAAGCATGCTTTCTAAAATAATGATAATGTACAAAACTGTAAACAAGCTCCAATAAATGCTTTGTTTATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058093:ENSMUST00000012873:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.007
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0013017=C1_1=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF0013017=C1_1=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF0013017=C1_1=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.6),PF0013017=C1_1=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.7)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000012873





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000115783
  



Associated events






Conservation


Human
(hg38)
chr7:64979537-64981386 
ALTERNATIVE
HsaINT0186173
(ZNF117)
Human
(hg19)
chr7:64439915-64441764 
ALTERNATIVE
HsaINT0186173
(ZNF117)
Rat
(rn6)
chr1:37983005-37988340 
Cow
(bosTau6)
chr18:57703861-57703908 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr4:61896770-61897183 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCTGGTCACATGTCTGGAGCA

				
R: 
CCTTGCCACACACTTCACACT

				
Band lengths: 
347-1647

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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