HsaINT0186173 @ hg19
Intron Retention
Gene
ENSG00000152926 | ZNF117
Description
zinc finger protein 117 [Source:HGNC Symbol;Acc:12897]
Coordinates
chr7:64434830-64441860:-
Coord C1 exon
chr7:64441765-64441860
Coord A exon
chr7:64439915-64441764
Coord C2 exon
chr7:64434830-64439914
Length
1850 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GTTACTTTTATTTCTTTCAGTTA
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAG
Seq A exon
GTAAGTGAGAGTGAATACACAGATGGCACAGAGAAGAGGTCAAAGGCCAAGGAGAAGGCCACAGCTTAAAATGTGATTTGGTAAGCTGTGTTCCAAAGGAAATAGTTTCTGGAAAGCCCGAGTTTTTTTTTATTTTTCTCTCACATAGAACATATTTTGTATTGTTTTTCAATTCTCTAAGGATTCCTCTTTCCCTTTAGTGATCTGTCTTCAATTTCACAGTGAAAGCCAACATCCTCTTCATGGGATATAAAAGACTGCACAATCTGACTGGTTTTTTTTTGTTGTTGTTTTGGGGGACACACAAATATGCATAATTTTGAGAAACTCTATGTTAAACAGTTTTTTAAATTCTCTTTTTGCATCAAGTCTGAAATGTGTGAGTAGTGATTTCTGTTCCATTGGTTTTTTTGTTGTTGTTTATTTTTCTGTATATTCCATTCTGTTTTTACTACTATAGCTTTGAAATATAGTTACATATGTAAGGCATATGCAGTGCCAATATACCTTTTCAGGATTTGGCTATTTTGGATTGGCTTTTTCTTTTTATTTGGCAGGACAGATTTGCTGCTGGTATTATTCTCACTTGACAGCTATTTTCTTCAGGACTTGGACAATGTCACACAGTTAGTTCCCTTCTGGCCTGCAAATTTTCTTGAGAAATTCACTCATTACCTCATAAGACTATGCTTATAAATAACATATCACTTTTATCTTGCAACTCACAATATTCTCTTGTCTGTGACTTTTAAAATTGTGCTTATATATGTTCTTGTTGTAAATATCTTTGTGTGTATTCTAGTTTCTTTGTTAACCTTTTTAATTTTTACATCAGTTTTTCTTATAATTTTTCAGTTCCTTTTTTATATTTTTTACCTCCACAATATCTGTTTTTTGATATTTTTAATATTTTTGTTATCCCAATTTTTATGATTTTTAATAGTTGTCTGTGTTTCTATTTCATTCATGGAGTATTATTCAATTTATGTTAACTTTTTAAAATTAATTTTTTAATGGTTGCTTTCTGAAAATTTTATAATATCTGATAGAGCTATGTTGCCCTAAAATTTTGTATGCATTGTAATCTTTAATTGAAATTTGAACATTAAAAACAAGCTACCTGTCACAGTGTCTATAATGTAGCTTTGTCCTGGCAAAGTCTGAAACCATTTGTCTTAGCTAGAGATCCTGAGAGTCTTTCAAACATGTTCTTAGGATGTGTCTTGTCTGAAATGTTCTAGTTGTTTTTTAGTTAAAAGACTTTATTCATGTTTCTTCTTAATAGTCATCACTTGCCACAACTGTTCCCTGTCTGTAGTACAGTCTCTTTCCTGCTGTAACATTTACCTTTGATCTCAGCAGACTCAAAATGTCATTCCAAAGTATACCACTGTTAATTTCAGCACTTTATGTCATTGGAGACAGAAACCAGTGTCCGCCAAAGCACCTAATAAAGCCAGAAATAAAGATGTGGGTGTGTTATTTTTCTTGTCTGTTGAAAAAGAAAGCAAAAGTTGGTAATGTACTTCTAAAGACACTATGTTATACTGAGGAGCAGAAAGAGCTGTGTTGGGTAAATGTAACCAACTTTTCTCTTCCTTCCATGTGGCTTTTGGAATTGTGATAACCTGGAACACTGCACACACGTAACTCATTTATAAATTTTCTATAAATGCATTTTGGTCAATATGCTCTTGTTACATTTATATGTCTATGAAGGAATTAGAACCTGTGGTATTTTGCTATGCCATCTTGCTTATGTAGTTTCTGTAACTTTATGGGTTAGATTTGTAAAGTATATTCATCTGAGTCGAGCAAGTGAAGTAGTTTGTTACTTTTATTTCTTTCAG
Seq C2 exon
TTATGTTTTATTATTTTGCCCAACACCTTTGGCCAGAGCAGAACATAAGAGATTCTTTCCAGAAAGTGACCCTAAGAAGATATAGAAAATGTGGATATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGTTGAGTGTAAACAGCACAAAGGAGATTATAGTGGACTTAACCAATGTTTGAAAACTACCTTGAGCAAAATATTTCAATGTAATAAATATGTAGAAGTTTTCCATAAAATTTCAAATTCAAATAGACACAAGATGAGACATACTGAAAATAAACATTTTAAATGTAAAGAATGTCGCAAAACATTTTGCATGCTTTCACACCTAACTCAACATAAAAGAATCCAAACTAGAGTGAATTTCTACAAATGTGAAGCATATGGAAGAGCCTTTAACTGGTCCTCAACCCTTAATAAACATAAGAGAATTCATACTGGAGAAAAACCTTACAAATGTAAAGAATGTGGCAAAGCCTTTAACCAGACCTCACACCTTATTAGACATAAGAGAATTCATACTGAAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCATCGACCCTTACTACACATAATATAATTCATACTGGGGAAATTCCCTACAAATGTGAGAAATGTGTTAGAGCTTTTAACCAAGCCTCAAAGCTTACTGAACATAAGTTAATTCATACCGGAGAGAAACGTTATGAATGTGAAGAATGCGGCAAAGCTTTTAACCGATCCTCAAAACTTACTGAACATAAGTACATTCATACTGGAGAGAAGCTGTACAAATGTGAAGAATGTGGTAAAGCCTTTAACCAGTCCTCAACCCTTACTACACATAAGAGAATTCATAGTGGAGAGAAGCCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAACAATTTTCAAATCTTACTGACCATAAAAAAATTCATACTGGAGAGAAACCCTACAAATGTGAGGAATGTGGCAAAGCTTTTAACCAACTCTCAAACCTTACTAGACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGGAGAATGTGGCAAAGCCTTTAACCAGTCCTCAGCCCTTAATACACATAAGATAATCCATACTGGAGAGAATCCCCACAAATGTAGAGAATCTGGCAAAGTTTTCCACCTATCCTCAAAACTTAGTACATGTAAGAAAATTCATACTGGAGAGAAACTCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCGATCTTCAACCCTTATTGGACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCAATCTTCAACACTTACTACACATAAGATAATTCATACTGAAGAGAAACAGTACAAATGTGATGAATGTGGCAAAGCTTCTACCTGATCCTCAAAACTCATTGAACACAAGAAAATTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGGCAAAACTTCTAACCATTTCTCAACCCTTACTAAACATAAGATGATTCATACTGGAGAGAAGTTACACAAATGTGATGAATGTGACAAAGCTTTTAACCAATCTTCAACCCTTTCTACACATAAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAGAGCTTTTAATTGATCATCAAACCTTATTAAACATAAGAAAATTCATATTGGAGAGAAACCCTACAAATGTGAAGAATGTGGAAAAGCTTTTAACCAGTTCTCAACTCTTACTACACATAAAATAATTCATACTGGAGAGAAACCATATAAATGTGAAGAATGTGGCAAAGCTTTCAACCTATACGTAAACCTTACTACACATAAGAAAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTAGCCAAGTGTCAACTCTTACTATACATAAAAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTAACCAAGTGTCAACTCTTACTATACATAAAAGAATTCATACTGGAGAGAAACCTTACAAATGTGAGGAATGTGGCAAAACTTTCAGTCGATGCTCAAAACTTACTACACATAAGAAAATTCATACAGGAGAGAAACCTTACAAATGTGAAAAATGTGCTAAAGCTTTTAGCCAGTCTTCAACCCTTTCTACATATAAGATAATTCACACTGGAGAGAAATGCTACAAATGTGAAGAATGTGGCAAAGTTTTTAACCGATCTTCAAACCTTACAGACCATAAAAAAATTCATACAGGAGAGAAATCCTACAAATGTGAAGAATGTGACAAGGCCTTTAACCTGTCCTCAACGCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACTGTACAAATGTAAAGAATGTGGTAAAGCTTTTAAACAGTTCTCACACCTTGCTATACATAATATAATTCATACTGGAGAGAAACTCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACTTATCCTCAAACCTTACTGCACATAAGAAAAATCGTACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTAACCTATCATCAACCCTTACTCCACATAAGACAATTCATATTTGAGAGAAACCCTGCAAATGTGAAGAATGTGGCAATGCTTGTAACTAAATCTCAAACTTTACTAAACATAAGAAAATTAATACTGGAAACTTTACAAACCTGAAAGATGTGACAATGATTTTGACAACACCTTCAAACTTTTCTAAACATAAAATAAATCATACTGGTGAGAAATCTTAAAAATATGAAGAATGGTACAAAGCCTTTAAATGGTTGTCACACTTGATTGTAGGTAAGATAATTTATACTGGAGGAAACTCCCAGAAGTGTGAAGAATGTGGCAAAACTTTTAATTTTTCACACCTTATAGCACAGGAAAGCACTTCAGAAAAATTGTACAAATATAAATGTGGAAAAGCCATTAATATCTGCTTACATCTTACTCAACATTAGAGAGTTAGTGCTTAATAAAAGCATTATAAAAGCAATTAGTGTAAAATCAGAAAATGAAAGTTTTTTTTTTTTTTTTAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTTAGCCTCCAGAGTAGCTGAGACTACAGGCACACACCACCACATTTGGCTAATTTTTTTATTTTTAGTAGAGACTGGCTATCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAAGTGATCCACATGCCTCTGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGTCACTGTGCCTGACAAATATAAGCCTTTAAAGAGAAGAAGGTTTTCATTTTGAAGACAAACATTAGGTACATAAAGAGGGTTGTAGTGTCTTTATTTGTATCACAGATTTTATTGTACACATTATGTACTAAAGGAAAATCCTGAAGCAGTGCTCAAACTTTGATCAACATCAGGGAGTTTATATTGGAGAAAAACTGCAAATGTAATATATTTGGAAAAACATTTTTCAAAAACTACTGCTTAGAAAACACCAGGGGATTTATACTAAAATATATTTTTGCAGATGCAGTAAGTATAAAAGAAATTTAATCCAAAATTAAGTGTGTGTAAATATCAGAGAATTCACAGTAGAAATATCTAAGGCACTGACATTTTAGACATTGAACTAATCAGTGTGCTGAGTACAGAAAATAATCCAAAATTAAAGTTGGTAGATAAATTATTTATATATAACTTTAAAAGAGGTAGAAATATTTTTAGTTATAATTACATTTAAAGTATACTTTTTTCTTTGAAAAAATTACAAAATTTTTAAAAAGTGAATGATGTAATTCAACTCAAATTACTTCATGCTTTTCATTCTATTGTATTCACATGTGAAAGCATGTGATCAATTGCTGCTTCATCAAAGATATGAGACATTCTTTTTTGTTAGGTGGGCAATATTTTTTACCTTTTCTATGGAAGAGTAAAGACATTACAATGTAGGATGCATGATAAAAATCTAAGTGGAGAGGCTCTTTGTGTTTAATTTATAATATTGAATGATGTATGAGGGAAGTGTTCAGAGGAATATTCTGCATTCTAGTGAAAATATCTTTTATTTTAGTTAAAATTAAATTAAAATTAGTAGTATATCATTTTACTAACTGTACTTTTATGTAATAAAATGCAGCACATTTAAAAAATTTTAGATTATTGTGAACTTAATTTTTTAATTAAACTTTTTTTTTAACATGTTAAGACCAATTGTGCATTCAGTGAAGTATTATCATGCCACTAACTTCAACCTATCCCACCTTACTCAAGGGTGTTGGTAAAAGATAGTAACAATGTACTATTTAATAACAGAGTGGACTAACATCTCTAATAATTTCTCTTGCCAGTGACTTTAAACTAAAGAACTTAATTAAAGAACATTGTTCCCATAGGTTAAATTTTTATTCTTTTTCTTATTTAAACATATTTTTCTTAACTTTTGTGGGTACATAGTGTGTGTATATATTTATGCCATATATGGCATATTTTGATACAGGCATATGAATAGGTATTAATCACATCAGGGCAAATGAAATATCCATCAACTCCAGCATTTATCATTTGTATTACAAACCGATTCTACACTTTTAGTTACTTTAAAATGTACAAGTAAATTGCTATTGACTATAGGGTCATTTTCATGGGTATAATAAAAATTATATACAAGTATAAATAAAATCCTGAGTCTTAAAATTCTGAGTCCTGCTTAAACATTTTAAAAATTTTGTTATGTATTTTTCTTTGAACATGTCTCTCTGCCTGCAAACATAACAGAATTTTAGTATTGGTTTACATAGAGTTAACTATACCCATATATTACTCTAAAAATAAATGTTAAGTGCAAGAAAGTTATGGACTGTTTTTGTGTGAGTGTGAGTTTGTACCTATTTTCAAAAGAAAAGAGCAATATTGGAGCAAAACAAATATTTTAATAAAGTAATGTACTAGACAACTGAAAACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152926-ZNF117:NM_015852:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF102634=SprT-like=WD(100=14.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF102634=SprT-like=WD(100=12.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAAGGAAAAGAGCCC
R:
TTCAGTATGTCTCATCTTGTGTCT
Band lengths:
342-2192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)