Special

BtaINT0164970 @ bosTau6

Intron Retention

Gene
Description
Bos taurus zinc finger protein 181 (ZNF181), mRNA. [Source:RefSeq mRNA;Acc:NM_001076549]
Coordinates
chr18:45712670-45715961:+
Coord C1 exon
chr18:45712670-45712765
Coord A exon
chr18:45712766-45713751
Coord C2 exon
chr18:45713752-45715961
Length
986 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCTCTTTTGATATATTACAGATT
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTCTTTCCATACCTAAGCCATATGTGATTGCTTTATTGGAGGATGGCAAAGAACCTTGTATGGTGGAGGAAAAGCTGTCAAAAGATACATTTCCAG
Seq A exon
GTAAGTCGTGGTGAATCAGGAAACAGAGATCTTTGGTTAAAGATGCTTGTGTAAAGTATAGAGGCATTTTAGTGTATTTTAGGGATACTGTTATCAGAGATTCCAGACGTAACAAAATCTTACGTTTTGAGGGATGCTTAGATTTCTAAATGACAATTCCTCTACCCTAAATTATTATCTTTCTGTATTACTCATCTGATCAAAAATGGAGGGTTTTGCCATCATTGTAATCCAAATTGTTATTTATTTGAAGTGAAATAAGGCAAATTATTCTTTTATATGTCCATGTAAGGAAAAATATACAAATGGTTTTGGGCTAAAAAAGCTGTCAACTAAATGGAAAATCACTTTACCCCTGAGGCAGAACTTCAGAGATCAAGAGTGAACATAAATGCTAAAGGAAGTAAGGGATATATAAGAAGGTTTCTAACAGTATTTTCTGTCAATAAATATTATGAGTTCACACAGATCCTACCTAAACTCACAAAGGTTAAATCTTTCTGAGCCATAAAGAGTATTTACATTATTTTGTCGTCATTGTAGCTATTTAGTGCAGTGCTGTACATTCTCCATATTAAGCATACTAATCTGACAGCAATTGAGATTAATCAAAGTTTGGAGAACCAAGGCTAAGATAAAATGTAGTCATTCATATAAGTATAGACACAAAATGTTGGCTTGGGATCCAGAATGCCTTTTGCATTTTCTTTGATAGTTTCATTTTTTTTCCCCACAGACTGTCTATGTATTAATTCATTTCCCTTATTACACTCAGTTCCTGCCTCTATGAGCTGTTTATATTCTCTGTGCTCCATTTTAACTTTGTTCAGAAATCATTGAATATATGAGAGTTGTCAGAGCTATGTGTTTTCTTGGCACTGGGGAGAATGACTTTATTTTTTATCCAATTCTCCTGTTTCTAACATAGAAGTTTCCTTTCAAGAAGTTCAGATAAAGCAGTGTTTTGCTCTTTTGATATATTACAG
Seq C2 exon
ATTGTAAAACAAGATGGGAAAACAAAGAATTATCAATGAAGGAGGATATTTATGATGAAGATTTACCCCAAATGGTATTAAAGGAAAAAACTATACAACAAAATCATGAATTTTCAAATTTTAACAAGGACTTGTATTATATCAAAAAGTTCAAGGGGAAGTATGAAAATCAAGTAGAGCATTTCAGACCAGTGACCCTCACCTTTAGAGAAAGTCCCATTGGGGAAAGTGTTTACAAATGTAATGCATTTAAAAGCATTTTCCATTTAAAGTCTGTTTTTTCTGAACCACAGAGAATTTCTGCTGAAGGGAAGTCACATAAATGTGATATACTTAAGAAGAGTTTACCAACAAATTCAGTTATAAAAAATGAGAATATCAATGATGGAAAGAAACTTCTGAATTCTAATGAAAGTGTAGCAGCCTTCAGCCAAAGCAAATCTCTTACCCTTCACCAGACTTTGAATAAAGAGAAAATCTATACATGCAATGAATGTGGGAAAGCCTTTGGCAAACAATCAATCCTTAATCGGCACTGGAGAATTCATACAGGAGAGAAACCCTATGAATGTCATGAATGTGGGAAGACTTTTAGCCATGGCTCATCCCTTACTCGACATCAAATAAGTCACAGTGGAGAGAAACCTTACAAATGTATTGAATGTGGAAAAGCCTTTAGCCATGTCTCATCACTTACTAATCATCAAAGCACTCACACTGGAGAGAAACCATATGAATGTATGAACTGTGGAAAGGCGTTTAGTCGCGTTTCACATCTCATTGAACATCTGAGAATTCATACTCAAGAAAAACTCTATGAATGTCGAATATGTGGGAAGGCATTCATTCACAGGTCATCTCTCATTCACCATCAGAAAATTCATACTGGAGAGAAACCTTATGAATGTAGAGAATGTGGAAAAGCCTTTTGCTGTAGCTCACACCTTACTCGACATCAAAGAATTCATGCTATTGAGAAACAATTTGAATGTAACAAATGTCTGAAAGTCTTTAGCAGCCTCTCATTTCTTATTCAGCATCAGAGTATTCATACTGAAGAAAAGCCCTTTGAATGTCAAAAATGTGGGAAATCCTTTAACCAACCTGAATCATTGAATATGCATTTGAGAAACCACACTAGATTGAAACCATATGAATGCAGTATATGTGGGAAAGCCTTCAGTCACAGGTCATCTCTGTTTCAACATCACAGAATTCATACTGGAGAGAAACCCTATGAATGCATTAAATGTGGGAAGACCTTCAGCTGTAGTTCAAACCTTACTGTACATCAGAGAATTCATACTGGAGAAAAGCCATATAAATGTAATGAATGTGGGAAGGCATTTAGCAAAGGCTCAAATCTTACTGCCCATCAGCGAGTACATAATGGAGAGAAACCCAGTAGTACAATAAGTGTGGAAAAGTCTTTAGGCCATATGAGTCACTGTGTGTATGAAAGATCACATAATAGAGAAACTGCATAAAGGCAGTGTTCATCATACTATACTGTAGCTGTAGATCTTCTTGGATTCAAAATCAGAAAATCTATACTGGAGAAAATGTAATGAATATGGGAAAGTCTCTAGCAATGATATAAGCCTTATTGTTTATCACAATTCACACTGTAGAGAGACTATGATGGCAATAAGTGTGGGAAAGACTAGCCAGCATTAATCCCTTAGTTGACATAAGTAAATCCACACTGGAGAAAAACCCTTTACATGTAACAAGTTGGGAAAGACATTAGGCAAACATGAATCTCTTAAGAAACATTACACACATACAGAAGAAAAGCAGTACGAATATAGAAATTTTGGGAAGTCCTTCAGTTAAAATACATCCTTCATTCTCTACATCAGAGAACTCACACTGAAGAGAAAGTTTATGTAAGGAATGTAGCAAAGTGTTAGTTCACTAAGCTTGCAGGCATCAGAAGATTAATGCTAGAACCACCTGAAGGATGTAGGAAGTATGTGTAAGTCTTTCTTTGCAATGATGCTAATTTGTAAACAGTTCTACAGGAGAGCAAACAAGCATAAATCAACATGCATATCATAAAGTAGCAGCATGCATTTTACTCCAGGTCCTACATAAAAAATAGCTAATGGGCATGTGAAGATATATAGTCACTCAGTGAATCCAGTAAATGTAATAAATGAACATTGCAATAGAAGTAAAAAGTGGTATGAATAAAATTTTTCATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009889:ENSBTAT00000013039:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):

C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=PU(53.8=3.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGGAAAAGCTGTCAA
R:
TGTGACTTCCCTTCAGCAGAA
Band lengths:
355-1341
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development