MmuINT0179800 @ mm9
Intron Retention
Gene
ENSMUSG00000071284 | Zfp738
Description
zinc finger protein 738 [Source:MGI Symbol;Acc:MGI:3040706]
Coordinates
chr13:67768378-67774030:-
Coord C1 exon
chr13:67773935-67774030
Coord A exon
chr13:67772549-67773934
Coord C2 exon
chr13:67768378-67772548
Length
1386 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
3' ss Seq
TCTCAATCATTCCTCACCAGAAA
3' ss Score
5.56
Exon sequences
Seq C1 exon
GTCTTGCTTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCGGCTACCTCTATGCTCCCGG
Seq A exon
GTGTGTTAGGAGGAGGGAATCAGAGAACAGAGTGGGAAATTCTAAGATCTAATATAAAGCCATTAAGACATAATATTGTGGTATAAATCATCTTTTAAAGCTATACTTTTCTGTCTTTTTCTTTGAAAGGAAATTATCTAATGTTAAGGATGCTTTGAATCTCATAAGCTTTGTTTTCTTCCACCATGATATTAACTTGTGTTCCCCAGGACAGCCAAAGATCTGTTATTTCTAAGTAGTCTTTAACTCTGATGTTTATTTTTTAATATAAAATATAAAAAATGCATTTAAAAATGTGTACATACATTCTTAAAAGTGAAGATTTGTCTCTGTCCCTGCCTAGCTCCAAAATGAAAGGGACTGAAACTATAAGATTTATTTGATAAGATTCACAAGACAATTACCTGGCAATTAATGATCAGTTCTAATCTAAGTTAATCTGGCTACCTCCCAGCCAAAATTCTCAGGATACTTGCATTTTTGTATTAGTCTGGCTCTCTGGGCTTTGTGTGTCTTTACATTATGTCTCTCCAGACCCCGTCCTCCAGGTGAATCCTTTCCTTCCCTCCTGTCCCTCTCCTTCTTCTTCTCCTCCCCCAGCCCCAGCCTTCTCTTCTTCCCTGGGCTTGCAGATGTCCAACTCTTTCCTCTCTACAGTTGGTCTTTTGGCTTGTCAGTTTTCTTGGCAAGTTAGAGACTGAAATGGGATCAATATTTACACAAACTTCATAAGAGAAATTCTTAGAATACATATTACGTATCATGTGTGGATGGCAAGTAGATATGAGGCAGAAAAATCAGTGTTTGAATAATACCAGGATAATGTTCACATACTGCTCAAACCCACCATGCCTAAAGATATGCATAAGCTTCTTTCTTGAACTCTTGAAAATTTATTATTGATAACTTCATAAACTAAACTCTATACTAATATATTTATATCTATATCATATATATTTAATATATTATATAATATAGAATATAGAAATATTGTTTGTTCTGGTGTATTCAAAGGTAGACCATTCTATATTTTGTCTTTATCTAGTTATGAGATTTCTGTATTTCTGTTAGGAGCTGATTTGTATATACATAATGGGTTTTCTTAGCTGATATTATGTTTTGCTTACATTTTAATATTCTTTTGATTAATATTTTTGGTTCCATGTTCTAAACAGTCATGCTCTTCTTTTAGTACAAGGTGACATGATTTTCACTTATTCTGTGATTTAACTTAGGCTTCATTGAATACAGGTTTAGAAATTTGAATATAGGTTATCATTTATAAAAAAATGCAACTATGAGTAAATGTTTGTTATTAAAAAGAAGCATTATAAATTTACGGAATTTTGCTCTACCTTCACTAATTTCTCAATCATTCCTCACCAG
Seq C2 exon
AAAGAAAATGCTATAAGTGCAAAGAGTGTGGCAAAGTCTCTGAGTGGACAAAAGTGTTTCAAAATCACCAGATGCTTGATTTAGGAATGAATTACTACAAGTGTGAAGAATGTGCCAAGTCCTTCCATAGTCCATCATTAAGTTCTGAAGAGAACAGAATTCATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCCTTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAGTGTGTGGCAAGGCCTTCCAACATCCATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGAAAAGCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCATACAGGAGAGAAACCATACAAGTGTACAGTATGTGGCAAAGCCTTCCATTATCCATCAATATTTTCTAAACACAAGCGAATTCATACAGGAGAGAAACCATACAAGTGTGAAGAATGTGGCAAGGCCTTCCACATTTCATCATTTCTTTCTAAACACAAAATAATTCATAGAGGAGAAAAACCCTACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATCCATTCAGGAGAGAAACCATTCAAGTGTGAAGTATGTGGGAAGGCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACAGAAGAGAATCCTTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTAACCATGCAGAAATGCATACAAGAGAGAAACCATACAAGTGTGAAGTATGTCAAAAGGCTTTCCGTTCTCTGTCATCATTTTCTAAACACAAGAGAATTCATACAAAAGACAATTACTATAACAGTGAATTATGTGGCAAGGCCTTCATTTATCCTTCAAGACTTTCTAAACATAAGAAAATTTGTGCAGGAGAGAAGCCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCATGTTGCATCACTACTTTCTAAACACAGGACAATTCATACAGGAGAAAAACTCTATAAGTGTGAAGTATGTGGGAAGGCCTTTTATTATCCATCAAGACTTTCCAACCATAAGAAAATTCATACAGGAGAGAAACCATTCCAGTGTGAAGTATGTGGGAAGGCCTTCTGTTTTCCTTCATCACTATCTAAACACAAGAGAATTCACACAGGAGAGAAACCATACAAATGTAAAGAGTGTGGAAAGGCCTTCCGCTCTCTGTCCTCACTTTCTAAACACAAGAGAATTCACACAGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCCTTCCATTATCCATCATTACTTTCTAAACACAAGATAATTCATACAGGAGAAAAACCCTATAAGTGTGATATATGTGACCAGGCGTTTCATGTTCCATCAAAACTTTCTCATCACAAAATAATTCATAGAGGAGAAAAACCCCACAAGTGTGAGGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATCCATTCAGAAGAGAAACCATACAAGTGTGAAGTATGTGGGAAGGCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACCGAAGAGAATCCTTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTACCCATGCAAAAATGCATACAAGAGAGAAACCATACAAATGTGAAGTATGTCAAAATGCTTTCCGTTCTCTGTCATCACTTTCTAAACACAAGATAATTCATAAGGAAGAAAAACCCTACAAGTCTGACATATGTGGCCAGGCGTTCCATGTTCCATCCAAACTTTCTCATCACAAAATAATTCAGACAGGAGAAAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCTGCATTCCATTATTAGTTTCTAAACACAAGAGAGTTCATACAGGAGAGAATCCCTATAACAGTCAAGTATATAACAAGGCCTTCATTTATCCTTTAAGACTTTCTAAGCATAAGAAAATTTGTACAAAAGAGAAACCATACAAGTGTTAATATGTGGAAAGTCGCGCCACTTCCCATCATTACTACTAATACACAAGAGAATGCATACTGGAGAAAAACCCTACAAGTGTGAATATTGTGGCAAGGACTTCCATTATCCATCACTACTTTCTAAACACAAGTGAATTCATACAGGAGAAAAACCATACCAGTGTGAAGTGTGTGGCAAGGACTTCCATGTTTCATCATCACTATCTAAACACGGGATAATTCATATGGGAGAGAAGCCATACAACTGTGAAGTATGTGGGATGACCTTCCGCTTTTCATCATCACTATCTAAACACAAGAGAAATCATACAGGGAAGAAACCCTACAAGTGTGAGGAATGTGGCAAGGCCTTCCATTTTCCGTCAGTACTTTGGAAACACAAGATAAGTCACACTGGAGAGAAACCCTACAATTGTGACTTATAAGGCAAGGCCTTCCATTACTCATCATTACTTTCTAAATATAAGATGAGTCATACAGAAGAAAACCCCCACAAGTGATATATGTGGCAAGGCCTTCCATTATCCTTCAAAACTTTCCAGCCATAAGAAAATTCATGCAGGAGAGAAACCCTACAAGTGTGACGTATGTGACAAGGCCTTCCATTATCCATCATTACTTACTAAACACAAGGTAATTCATACAGGAAAAAAAACCCTCAAGTGTGAAGTATGTGGCAAAGCCTTCCATTATCCCTCACGACTTTCCAAGCATAAGAAAATTCATGGGGCTGGAGACATGGCTCAGCAGTTAAGAGAACTGGCTGCACTTTCAATTGTGCTGTCCTGGGTTCAAGTTCCGGCAACCACATGCTGGCTCACAGTCATGTATGATGGAATCTGTTTCCCTATTCTCGTATGCAGGGGTACATGCAGGCAGAGCACTCATGTACATAAAATAAATGTTATTTACAAAATTGATAGTATGTTGCCTGGTGACTAAAAGTAAAATATACCAGAGACAAACCAACCCTATTAGTGGAAGCATGTGGCAAGGACTTCCAATGTCCAGAACTATTTTCTAACCACAAGAGAAATCATATGGGAGAGAAACCCTCCAATTAGGAAGTATGTAGCCTGTTCCTCTATTGTCCATAATTACTTTCTGAACACAGGAGAATACACACAGGTTAGAAACCCTACAATTGTTAAGTGCAAGTGAACTCCTGTAGAATTTGCCAGATTTTTCATACTCGTTTAATGTGGAAAAGACTTTTCTACAAATATACACCAGTGTTTACACAAGTTAACTCATAATGTGGCAACATTTACAAATACAAAGAATATGTCCAAGTGTTCAACAAAAACTTTAGTGATCATCAAAAATTCATTTTGTCAAGAAAACATACAAATCTAAAGAATGTGGCAAATACATCAGAAGTTCCAAAGCATGATCTGAACACCGGATAATTCCTACTGGAGAGAAACATTACAATTGTGGAGAATGTGGCAAAACCTATTACCAGTCTTCTGGTCTTAAACAACATTCAAGAATTCATCTGTGAGTGAAACCACACAAGTGTGAAGAATGTTCCAAGGTCTTTTGTACTTACTAAGAATTTGTGAAACACCTCATAATTCATACGAAACTGAAATGCCACATGTGGAAAATGTTGCAAACCCTTTATTAAACTTTCTTATATTTCTCAACACAAAGTAGTTCAAATGGGAGTGAAATAATACAAATGTTAAATATTCATAATATGTTAACACTTCTTCAGACACTAAAAGCTCCCTGCTGAATAGAAACCAGATAAGAGTAAGCAATGTGTGGTAAGTAAAGACTTTGGAATCATTCACACAATCATGCCAAAAGTAGAGCTGTCAGATTGTATGTTTGTTCTCTGGATTTGGGGCTGATCTTTCCTGGGTGTCTTTTGTTTCTTCTGTTTTAGAATAAGAATACTTATTCTATACCAGTGAGTAGTAAAAGTAGTCTCTTGTTCTTATGTTGTAAGAGCTCACACAAAGAGATTGCCTTGAGTGTCATGTGACACATGGACTGTGAGCTTTCATAGTGTTGTAATTATTAAATCTTGTATGGACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071284-Zfp738:NM_001001187:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCACATGTCTGGAGCAA
R:
TGCCACACACTTCACACTTGT
Band lengths:
358-1744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: