RnoINT0001256 @ rn6
Intron Retention
Gene
ENSRNOG00000049662 | AABR07009083.1
Description
NA
Coordinates
chr2:86470186-86473700:-
Coord C1 exon
chr2:86473605-86473700
Coord A exon
chr2:86471511-86473604
Coord C2 exon
chr2:86470186-86471510
Length
2094 bp
Sequences
Splice sites
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
3' ss Seq
CTTTAACAATTTTTAAACAGGAT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTCTTGCTTTCTCTAAGCCATACCTGGTCACCTTTCTGGAACAAAGTTCAGATCCATGGAGAGTGAGGAGAAAAGCATCAGCGGCCATCCATCTAG
Seq A exon
GTCTGTAGGAATGAGTGAGCAGCTCTCATGGGTGACAAGTCAATTTGTAATTGAGAAGTTACATTTTGGGTGTAAATCGTATTATCAAGTGGCTTTTCCTTCATGATGTTACCCATGATAATCCTCTTTCTTTCTCTCCAAGAAGCTTTGTATGTGTTTACACAGTCTGCCAACGTCCTTTATTTAACTTGTTTTCTCGTATCTGTGTGTGTCATGTTTCTGTCTGCAAACATATTTGCATGTATATGTTTGCCTGTGCATGGGTGCAAGTGTGCACACACATTCACATGTAAATATGTGCCTATGGAGGACCAAAGTTGATGTTGAGAATCCTCTTTGATGGCTCTTCTACCTTATTCTGTGAGGCAGGGTCTCTCAGTTGAACTCAGAGCTAGCCTCCGAGGTAGCCAATTTGTTCTAGGGATTTCCATGTCTTCACCTTCCAACCCTAGAATGACAAGCTGGCCACAGTGCCCACTCTCTATTTACAAAAGTTCTGGGTCTCCAAACTCCAGTCTTCACACTTGTGTGGCAGGCATGTTGACTGCTGAGACTCCAGTCTTCACACTTGTATGGCAGGTACTTTTACTTCTGAGACTCCAGTCTTCACTTGTGTGCTAGGCATGTTGACTGCTGAGCCATCTCCATGGTCCCAGTCCTTTTATTTTGCCTGGAAGCATCTAAATCACAACATACTTTACTTTCAATGACTCAGAAAAAGGGTACACATTTAGTATACTTAGTAACAGTAACACCATAGATGAGCATCCCTAACTTCATTTACATGCTCATTAGCTAAACTGGCTTCATAAGAGTTTTCATGTGTGTGTTTGTGTGTGTACACATGTGTGCACATGACACTGCTCATTTTAATGTTAGGTGACAAAATGCAAGGGTTGATTTTCTACTTCCAACCTGTGGGTTGTGGGGATGGAGATCAATGTTCCTTATCTTCCGAGCAATCTTATTGTATATCTTATGAGGGTTGGGTTTATTTTTATTTATTTATTTTTTTTGCCACTCAGTGGCAGTATATTATAATGCTTTGCTTTTATAAGTATGTAGTCTAGCTGAAAACTACACATTTAGATAAGTTTTTTTTTTTTTTTAGTAGATCTTTAATAGTGTCTCAAAAATTTATGGCTCCAAAATTTAATCTTTTTGTTATTTTACAATTCTATTTTCTGTTGATTTTTAAATCTAGACTCTTTTACATTATGTAACATGCTTAGCCATTCCATATTAATTACCGTGTCCAATAAAGACAATATAAGACATTAAAGAGAGCTATGCCATGGGTCTGTTAAAAGTGATGTTACCATTTTCTATGAAAGTATTATTCTTAATTTCAAGACACATGTATTTTCTCCCTTCATTGGTTACTTAATAGTTGTTGTAGCCTTCTAAATGAGTATTCCTAGAAATTATGTAACTTTTGTGTTTATTGACACATAGTTTCCTTAGCTGAACTTATTATACCCCTTGTAGGTAAACTAGAAATTTTTCACAATTTAATTTTTAAGGTATTTATTTTTAGTGAAACATATCACTGCCTTAAAGATTTCATGTATTGATTTAAAAGTGTTATGCAGCACATCTTTACACAATTTTAGAGCTTTGAAAACTGAAAATGTATACTCAAAAATCTTTTATATTTCTACCTGCAACCAATTTACTACAATCAACATTGCTTTCCTGTTTGATATGTTTTCAAACTTTGAATTTTCATGCAAGACCAGCAATACATCTTTAAATAAGGGTTTCTTTCATGTAATAAAATGCACCTTAGGTGTTTTTTACTTAGGTGTTATATCAAGTTTGGCTTTTAACTTTCATAATTTCCTATTATTTGCTTGTTTCACATTGTCTTCATATTCTAAGTTCATTGGTGGATTATGTTGTTTAAACCTGTAGTATCTGAATGAGGCTACTGGGAATATAGGTGTGCAAATGTCTATAGTTTCCCATTTATATGATGCTTAATTTTATGTCAAAATATAGTCACAATTTTAAAGTATTCATATTTAAGATGAATAGTATAAATATAACGTATGGTGGTATACTTTTACTGATACTTTAACAATTTTTAAACAG
Seq C2 exon
GATCAAAAGCCCACAAATGTAAAGAATGTGGGAAAGCCTTTGATAGGAACTCAGTCCTTATCCAACATCAAAGAATCCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCATGGCCTTTACTGTTCGCTGCATTCTTTCTAAGCACCAGCGAATCCATACTGGAGAGAAACCCTATAAATGTAAAGAATGTGGCAAAGCTTTTTCTTCTAACCTTCACCAACACCAACAAATTCACAGGGAAGAGAAACTCTATAAATGCGGTGAGTGTGGGAAGGCCTTTAGCTGTTCTTCATATCTGCATAGGCATCAGCGAATCCATACTGGCATGAAACCCTACAAATGCAAGGAATGTGGCAAGGCCTTTAACTGTTCTGCAAACCTTATTTACCACCAGAGAATTCATACTGGAGAGAAGCCATATAAATGTGGTGAATGTGGGAAAGCCTTTACCATTTACTCAACGTTCATGAATCACCAGCGAACACATAGTGGAGAAAAACCCTATGAGTGCAAAGACTGTGGGAAAGCCTTCACTAATTGTTATAATCTAATTCAACACCAAAGAATTCATACTGGAGAGAAACCCTATGCATGTGAAGAATGTGGTAAATCTTTTAACTATTCTTCCCACCTTAAACAACACAAAAGAATCCATACTGGAGAGAAACCATATAAATGTGAAGTGTGTGGCAAAGCTTTTAACTGTTCTGATTATCTGGTTAAGCATCAAAGAATCCATACTGGAGAGAAACCCTACAAATGTGAAGTATGTGGCAAAGCTTTTAGCTTTTCTACATATCTGCATAAGCATCAACGAATCCACACTGGAGAGAAACGCTACAGATGTGAAGAATGTGGCCGAGCTTTTACTAATTATTCGGGGCTTATTGTTCACCGAAGAGTTCATACTGGAGAGAAACCCTACAAATGCGAAGAATGTGGCAAGGCCTTTAGTGTTCATACATCGCTCTCTAAACATCAGAGAATTCATACTAGAGAGCAACCTTATAAATGTGATGAATGTGGAAAGAGGTTTAATGTTCACTCAGCATTCTCTAAACATCAGATAATGCATACTAGAGAGAAACCCTACAAATGCAAACACTGTGACAAGACCTTCAAATATCCTTCACCCCTTGTGCAACATGAAAGAATTCACACTGGAGAGAGACCCTACAAATGTGAAGTATGTGGCAAGGCCTTTACTTCTTCTTCAAATCTTAAATATCATTGGAGACTTCATACTGGCGAGAAGCCTTATAAATGTGAACAATGTGGTAAAGCCTTTAAAAATAGTTCAAATGTTACTCGACACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049662:ENSRNOT00000075247:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=PU(23.8=15.2),PF0013017=C1_1=PU(7.0=12.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(71.4=3.4),PF0013017=C1_1=PD(91.2=11.8),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0013017=C1_1=WD(100=12.7),PF097235=Zn-ribbon_8=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0013017=C1_1=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]