Special

MmuINT0178570 @ mm9

Intron Retention

Gene
ENSMUSG00000051034 | Zfp11
Description
zinc finger protein 11 [Source:MGI Symbol;Acc:MGI:99156]
Coordinates
chr5:130160470-130166740:-
Coord C1 exon
chr5:130166645-130166740
Coord A exon
chr5:130164261-130166644
Coord C2 exon
chr5:130160470-130164260
Length
2384 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ACGTCTTCTTTTCTCCCCAGAGA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTCTTGCTGTGTGTAAGCCCTACCTGGTCACGCTGCTGGAGCAGAAACAAGAGCTTTGGGATGTGAAGGGACAGGAGTCAGGAATCATGTCCCCAG
Seq A exon
GTAGGTGGGAATGGATCGGAAAACACAGGAAGATGCCTGGCTTTCAGTTGTGGGCAGGGAAGCTCTATCTCAGAGAAGACGATTGTTCAGGAGCCCCTGGAGCTGGAGTCACAGACGGTTGGAAGCTGCCATGTGGATGCTGGCAACTGAACCCAGGCTCTCCCTCTGGAAGAGCTACTCATGCTTGAAACTGTGAGCTATCTCTCTGGCCCTAGCTATGTAACCTTCAAGTGCACAAGTAATGAATTAAAACAGCAGTAATGCAAAGTCTATCATCTGCTCCTGTCTCTGTGGGCCAGGGCCATCCAGATAATACAGCCGTGCATGGCATGGAGGTCATTACTGTCCGTCCTTCACATAGGTTTTTGTTTGCTGTGTTCTGTAGGGTCTTATGTTTATCTGCTTAGGACTTCAGGGCTTAGGCTGGAGGGAATTCTCTGTGTTGAGAACAAGTCCTGCTTTTGCAGAGGACCCAAATTTGATTCTCAACGCTCAGTTTGGGGGAGGGGCTCCGCTGCTCCCTTGGGGCCTCTGCAGGTGCATGCACACACACCCTCCTGTCCTGCAGTTACCTGCCAGCCCTCACACACCTCCCTCACACAGGCCTTAGTCCTCCCTTTTCTCTCCTAAGAGAGCAGACGGATGTCAGAAGCTGTCTATATTTTGGGGGTGACCATGGAATGTTGTTTTCAGAAAAGAGGAGCTATGGCTAATGACAAAAATAAAAAGACTCCCCTCAGGTGGCCTTAGTGATGTTCTCACTGGGGCACTGCTGGGGATTTGTCACAAAGGCAGTTGACGGTTATCTTTCGTTAGTTTCATGTTCCTTCAGGGCAGTGGAGAGGCTCCTCTGCCTGCTCTTCTGCCATCCGGAGGACACGTCCTCTTGGCATGGTTTTGATGTTAGATTTAGAAGTAAGTCACCTTAGTGTGGCAGCTGAGGCGACTGGTTATTTTGATTTCCTGCAGCTGTTTCTTCTCATTGTCTGTAGGCTTTTCACTAGAGCAGGACAAAACAAAACAAAACAAAACATAAACAAAAACAGCAAAACCTCCCCCAAAACCATTTATTCAAAAATATGATAGGGAGAAGATATGGGAATTATTATCTTGACAGCTTGCATTAAAGAAAGACAGGAATGTACCAAAGCCTTCAGATATCCTCGCCACAAAATTGTTCCCACGGGGGCAAAAGCCTACAGATGCCAGGAGTGTGGCAAAGGCTTTGTAATAGCTCAACTCTTAGTCAACACCAGGGAGTTCATACAGGAGAGATGCCCTACAAATATGCATTTCACAGCATGGGACAGCCCTGCACAACAAAAAGCCCATTGCCAACAGAGGTCAAGAGCATACAGCATCCCAGAAAATCAGTTAAGAGACTATATATGTTTGATTAAATAGCCACATCGCATCTGGTAATATAAGTTTCCTTTTAAATGAAGTTTGAGTAATTCTTAAAATGTTCCACGCTTTAATTAGGAACTTGAACAGTTGAAATGTAGCTGGACTGAATTTTGAGGCCAGTGTTCCTTTAGAAGGAGACTGGAGCATGAAGAACACGTTTGGAGGTGCAATTTGAGGGCCTCATTGCTCGGCTGCCAGCATTGGTTTTCTCTGCACCACAACACACAGCTGATCACACACAGAAAGTGTTGTTGTTGTTGTTTTGGGGTTTGTGGTGGTTTGAATATGTGTGGCCCAGGGAGTGGCACTATTAGGAGGTGTGGCCTTGTTCAAATAGGTGTGCCCTTGTTGGAAGAAGTGTGTCTGAGCAGATGGGCTTTGAGACCCTCCTCCTGAGTCTTTCTGGTTGCAAGGCAGTCTAATGTTTGTCTTTGGGACAAGACATAGAACTCTCAGCTCCTCCAGCATCAGGTCTGCCTGGGTGCTGCCATGCTTCCTGCCGTGATGATAATGAACTGAGCCTCTGAACTTGTAACCCAGTCCCAATTAAATGTCCTTTATAAGAGTTGGCCTTAGTCATGGTGTCTATTCACAGCAGTAAAACCCTATAAGACAGGGTTACTGGGTTGTTTTATTTTGTTTTGTTTTTTTTGCCATTGATTTGTTTTGAGAAAAGGTCTCACTGTAGCCCAGGCCATCCTGGCACTTGGTATGGCGCCCTGCACACCTTGAACTTGCCTTGATCTTTCTGCTTCACCCTCCTCTGTGCTGAGCTTATAGCTCCCACACTCAGTTAACCCCCTAATCCATTCTTTTCACATCCGCATCCACATGCAGACCCTTGGAGAATCCAGCATGTGTGTGATGATATAGGACATTCACGAGGCTGGGAAATAACGCACAGGAGAGAAAATGCTGTTAGTCTAATGAAATTCATAGTTTTAGCCATGAAATCGTACGTCTTCTTTTCTCCCCAG
Seq C2 exon
AGAATCTTTCTGACTGTAACAACTCTGTAAAAGACTTTGATCAACACCCAGAACTTACCATCCGGCAATGTGTGCACAGAGAGAAGCCGTACAAGCAGGAAGAATGTGATGACTCAGCTTGCGATCAGCATCTCAGGGTGCATAAAGGAGGCATGCCCTATGAATGCAAAGACTGTGGGAAAGCCTTTAAATACCGCTCGGTCCTCTACCAACACCGCATCATTCACACGGCCGCAAGACCCTACAAATGTAAAGAGTGCGGCAAAGCTTTCAAGAGAAGTAGAAACCTCGCTCAGCACCAGGTGACACACAAGAGGGAGAAACCACACAAGTGTGAAGAGTGCGGCAGAGCCTTTTCTGCACTTTCTGTCCTTACTCAACACCGCATCACCCACACCGGAGAGAAGCCCTTCAAGTGTAAAGAGTGCGGCAGAGCCTTTAAATATAACTCGACCCTTACTCAGCATGAAGTCATTCATACTGAAGCCAAACCCTACAGATGTCAGGAATGTGGCAAAGCCTTCAAGAGGAGCCACACGCTCAGTCAACACCAGGTAATTCATAAAGGGGAGAAACCGCACAAGTGTGACGAGTGTGGCAGGGCCTTCAGTAAGCACTCGTCTCTTACACAACACCAGGTCATCCACACCGGAGAAAAGCCCTATCAGTGCAGAGAGTGCGGGAAAGCGTTCAGGTATCAATCAACCCTTACCCGACACCACATTGTTCACACCGGCGCCAAACCCTACAAATGCCCAGAGTGCGACAAGGCCTTCAATAACAGTTCGACCCTCAGTCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGTCAGGAGTGCGGCCGGGCCTTCTACTGCTCCTCCTTCTTGATCCAGCATATGAAGATCCACTTCGAGGAGATGCCCTACAGGTGCAGAGAGTGTGGCAAGCCCTTCAGGCTCTCCTCCCAGCTTATCCGACACCAGAGAATCCACACCGGGGAGGAGCCCTACATATGCAGAGAGTGTGGCAAGACCTTCAAGTATCAGTCAAACCTCACCCGCCACCAGATACTTCATACCGGCGCCAAGCCCTACAAATGCCCAGAGTGCGGCAAGGCCTTCAATAACAGTTCCACCCTCACCCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGTCAGGAGTGCAGCAAGGCCTTCTACTGCTCCTCCTACTTGATCCAGCATATGAAGATCCACTTTGAAGAGATTCCCTATAGATGCAAAGAATGTGGTAAACCGTTCAAGTGTTCTTCACAGCTTATCCGACACCAGAGAATCCACAGCGGGGAGAAACCCTATATATGTAAGGAGTGCGGCAAGGCCTTCAACTGTACTTCATACCTTACTAAGCACCAGAGGATCCATACCGGGGAGAAACCCTACGTGTGTCAGGAGTGTGGCAAGGCCTTCAACTGTTCTTCCTATCTCTCTAAACATCAGAGGATTCACATTGGAGACAGACTCTATAAATGTAAAGAGTGTGGCAAAGCCTACTACTTCTCCTCACAGCTGAACCGACATCAGAGGATCCATACCGGGGAGAAACCCTATGTGTGCCAGGAGTGTGGCAAGGCCTTCAATTGTTCTTCATACCTTACTAAGCACCAGCGCATCCATATTGTAGAAAAACCGTATGTGTGTAAAGAGTGCAGCAAAGCCTTTAGCTGCTCCTCATACCTGACTAAACACCAGAGGATCCATGCTGGAGACAGGCTATACAAATGCACAGAGTGTGGCAAAGCCTACTGCTTCTCCTCACAGCTGAACCGACATCAGAGGATCCACACCAGAGAGAGACCCTATAGATGTAAGGAATGTGGCAAGGCCTTTATTACTTCCTCCTGCCTTAAACGACACCAGGAAACTCACACTCTCCAGACACCAAACAGTGTATAGAATTTGTGTATATGTGTATGTGTATAATAAGCAAAGCCTTACTAGGAAGACAGTTGTTACCGAGTGTTTCATAAAAGGGAAAAAACCCTGTTCTTGCACTTAGTGTCTTTAACAACTGCTGAACCTTCCATTTGCACCAAAAAGGCCCATCTATGAGGGGAGACGATACAGGTGTAAGGAGTCTGGCAAGACCTTTAAGTCGTGTGTGGTACTGTTTCAGAGTGTGTACTGAACATCCCATAGTTGAAAACTGTTACAGATGTGAGAACATGGCCTGGCCTTTGATCACAGCTTTTCTTTTTTCTTTTTTTTTTTTAAGATTTATTTATTTATTTATTCTGTGTATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTAGGACTTCTGCTCGCTCTGGTTGGCCCTGCTCCCTCGGTCTCTGCTCGCTCTGGCCCAAAGGTTTATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACACCACAAGAGGGCATCAGATCTCATTACAGGTGATTGTGAGCCACCATGTGGTTGCTGGGATTTGAACACAGGACCTTCGGAAGAACAGTCAGTGCTCTTATCCCCTGAGCCATCTCAACAGCCCGATCACTGCTCTTCTTTATTGGACAGTAGCAAATTCATATTGGGAAGAGTATTGTCCTATGTCTAACCCTCAGAACAGTCCAACACTATACTACAAATTCCCTCATAAAATGAAAAGATTGACATTTCACTAATACCTCAACAAATCTTTTTATTACAGACAGGATCTCTGTAATAGCCCTAGAACTCACTCTGTAGACCAGGCTAGCCTCAGACTCACAGAGATCTGCCTGCCTCTGTGTCCAGAGCACTGGGACTAAAGACATGCACCCCCAGGCCCAGCCCATACCTCAAAACTTGGTGTATACAAAAAATTATCGTTGGGCAGAAATCTTACAAATATGTAGAATGTGGCAAAATTTTGAACTGCTGCTTATCATTAATAAATGGGTGGAAAGACTATATCACAGGTGTCAGAGTGATTTGAACTCATCTTTGAAAGGATGGAATTTGTTTTACATCCAAATTTACTAAGTAACCTCACTTTAAAAACTATACAAAGCTCAGCCCTCAGGCCATCTCAGCAGAAAAATAATCCTGCTTTCTGAGAAGTTTTAAACCGTTCTTTTTCTAGAGAGCATAGAATTGATTTTGAAGAACTGTGTATTATGTATAGACTTTATTTTAGTACATACATGGAGTGAATGGTTCTTCACTTGTTATCTCTGGTATGTGTTGTTTGACATGTTATTTTGTCACAGAGATCAAACCGCCTTACCGTAGCATGTACATACAGATCTTAGTAATATATTGTTGAGAAATACTGAGTGATTGGTAGTTCTTGTTCCCAATGTCTTTATCCCTCAAACAGATGTATAGATTTGGAGATTTTTTTTGTGTATGTGATATTTTAATCCACCCTTTTTGCACTTAACCCAGAAATTACAAAGGATGTGAAAGTATAATAAAGTGTTCTAGCTTTCTGAAGCTCAAGTCATTTATACATTTGGTTTTTTGTCACATGGTTTTTATGCACACATCACCCCTTTGGATATATACAATGAACACCGAATTGTTGGTATTCGTTTGTGTTGACTGTGACGTAAAATCCCATGGCAAACCTTAGGAGTGAAAGTACAAAAGTTCTCTCTGCTCGTGGGTAATGATTAAAAATTAAAGGAAAGTTAAAAACCAAAAATCACTTTAAGGGAGCTGATATTTATGGCGAGGTAGAAAGCTTTTGTTTGGGGGAATAAAGTCTATTTTGTCTAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051034-Zfp11:NM_172462:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.036
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF054957=zf-CHY=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000051861





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:21375965-21377388 
ALTERNATIVE
HsaINT1047659
(ZNF738)
Human
(hg19)
chr16:31765280-31765574 
Rat
(rn6)
chr2:122866147-122867451 
ALTERNATIVE
RnoINT0167923
(Zfp267)
Cow
(bosTau6)
chr18:57703791-57703908 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:51738985-51747138 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"