MmuINT0178570 @ mm10
Intron Retention
Gene
ENSMUSG00000051034 | Zfp11
Description
zinc finger protein 11 [Source:MGI Symbol;Acc:MGI:99156]
Coordinates
chr5:129654593-129660865:-
Coord C1 exon
chr5:129660770-129660865
Coord A exon
chr5:129658386-129660769
Coord C2 exon
chr5:129654593-129658385
Length
2384 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ACGTCTTCTTTTCTCCCCAGAGA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTCTTGCTGTGTGTAAGCCCTACCTGGTCACGCTGCTGGAGCAGAAACAAGAGCTTTGGGATGTGAAGGGACAGGAGTCAGGAATCATGTCCCCAG
Seq A exon
GTAGGTGGGAATGGATCGGAAAACACAGGAAGATGCCTGGCTTTCAGTTGTGGGCAGGGAAGCTCTATCTCAGAGAAGACGATTGTTCAGGAGCCCCTGGAGCTGGAGTCACAGACGGTTGGAAGCTGCCATGTGGATGCTGGCAACTGAACCCAGGCTCTCCCTCTGGAAGAGCTACTCATGCTTGAAACTGTGAGCTATCTCTCTGGCCCTAGCTATGTAACCTTCAAGTGCACAAGTAATGAATTAAAACAGCAGTAATGCAAAGTCTATCATCTGCTCCTGTCTCTGTGGGCCAGGGCCATCCAGATAATACAGCCGTGCATGGCATGGAGGTCATTACTGTCCGTCCTTCACATAGGTTTTTGTTTGCTGTGTTCTGTAGGGTCTTATGTTTATCTGCTTAGGACTTCAGGGCTTAGGCTGGAGGGAATTCTCTGTGTTGAGAACAAGTCCTGCTTTTGCAGAGGACCCAAATTTGATTCTCAACGCTCAGTTTGGGGGAGGGGCTCCGCTGCTCCCTTGGGGCCTCTGCAGGTGCATGCACACACACCCTCCTGTCCTGCAGTTACCTGCCAGCCCTCACACACCTCCCTCACACAGGCCTTAGTCCTCCCTTTTCTCTCCTAAGAGAGCAGACGGATGTCAGAAGCTGTCTATATTTTGGGGGTGACCATGGAATGTTGTTTTCAGAAAAGAGGAGCTATGGCTAATGACAAAAATAAAAAGACTCCCCTCAGGTGGCCTTAGTGATGTTCTCACTGGGGCACTGCTGGGGATTTGTCACAAAGGCAGTTGACGGTTATCTTTCGTTAGTTTCATGTTCCTTCAGGGCAGTGGAGAGGCTCCTCTGCCTGCTCTTCTGCCATCCGGAGGACACGTCCTCTTGGCATGGTTTTGATGTTAGATTTAGAAGTAAGTCACCTTAGTGTGGCAGCTGAGGCGACTGGTTATTTTGATTTCCTGCAGCTGTTTCTTCTCATTGTCTGTAGGCTTTTCACTAGAGCAGGACAAAACAAAACAAAACAAAACATAAACAAAAACAGCAAAACCTCCCCCAAAACCATTTATTCAAAAATATGATAGGGAGAAGATATGGGAATTATTATCTTGACAGCTTGCATTAAAGAAAGACAGGAATGTACCAAAGCCTTCAGATATCCTCGCCACAAAATTGTTCCCACGGGGGCAAAAGCCTACAGATGCCAGGAGTGTGGCAAAGGCTTTGTAATAGCTCAACTCTTAGTCAACACCAGGGAGTTCATACAGGAGAGATGCCCTACAAATATGCATTTCACAGCATGGGACAGCCCTGCACAACAAAAAGCCCATTGCCAACAGAGGTCAAGAGCATACAGCATCCCAGAAAATCAGTTAAGAGACTATATATGTTTGATTAAATAGCCACATCGCATCTGGTAATATAAGTTTCCTTTTAAATGAAGTTTGAGTAATTCTTAAAATGTTCCACGCTTTAATTAGGAACTTGAACAGTTGAAATGTAGCTGGACTGAATTTTGAGGCCAGTGTTCCTTTAGAAGGAGACTGGAGCATGAAGAACACGTTTGGAGGTGCAATTTGAGGGCCTCATTGCTCGGCTGCCAGCATTGGTTTTCTCTGCACCACAACACACAGCTGATCACACACAGAAAGTGTTGTTGTTGTTGTTTTGGGGTTTGTGGTGGTTTGAATATGTGTGGCCCAGGGAGTGGCACTATTAGGAGGTGTGGCCTTGTTCAAATAGGTGTGCCCTTGTTGGAAGAAGTGTGTCTGAGCAGATGGGCTTTGAGACCCTCCTCCTGAGTCTTTCTGGTTGCAAGGCAGTCTAATGTTTGTCTTTGGGACAAGACATAGAACTCTCAGCTCCTCCAGCATCAGGTCTGCCTGGGTGCTGCCATGCTTCCTGCCGTGATGATAATGAACTGAGCCTCTGAACTTGTAACCCAGTCCCAATTAAATGTCCTTTATAAGAGTTGGCCTTAGTCATGGTGTCTATTCACAGCAGTAAAACCCTATAAGACAGGGTTACTGGGTTGTTTTATTTTGTTTTGTTTTTTTTGCCATTGATTTGTTTTGAGAAAAGGTCTCACTGTAGCCCAGGCCATCCTGGCACTTGGTATGGCGCCCTGCACACCTTGAACTTGCCTTGATCTTTCTGCTTCACCCTCCTCTGTGCTGAGCTTATAGCTCCCACACTCAGTTAACCCCCTAATCCATTCTTTTCACATCCGCATCCACATGCAGACCCTTGGAGAATCCAGCATGTGTGTGATGATATAGGACATTCACGAGGCTGGGAAATAACGCACAGGAGAGAAAATGCTGTTAGTCTAATGAAATTCATAGTTTTAGCCATGAAATCGTACGTCTTCTTTTCTCCCCAG
Seq C2 exon
AGAATCTTTCTGACTGTAACAACTCTGTAAAAGACTTTGATCAACACCCAGAACTTACCATCCGGCAATGTGTGCACAGAGAGAAGCCGTACAAGCAGGAAGAATGTGATGACTCAGCTTGCGATCAGCATCTCAGGGTGCATAAAGGAGGCATGCCCTATGAATGCAAAGACTGTGGGAAAGCCTTTAAATACCGCTCGGTCCTCTACCAACACCGCATCATTCACACGGCCGCAAGACCCTACAAATGTAAAGAGTGCGGCAAAGCTTTCAAGAGAAGTAGAAACCTCGCTCAGCACCAGGTGACACACAAGAGGGAGAAACCACACAAGTGTGAAGAGTGCGGCAGAGCCTTTTCTGCACTTTCTGTCCTTACTCAACACCGCATCACCCACACCGGAGAGAAGCCCTTCAAGTGTAAAGAGTGCGGCAGAGCCTTTAAATATAACTCGACCCTTACTCAGCATGAAGTCATTCATACTGAAGCCAAACCCTACAGATGTCAGGAATGTGGCAAAGCCTTCAAGAGGAGCCACACGCTCAGTCAACACCAGGTAATTCATAAAGGGGAGAAACCGCACAAGTGTGACGAGTGTGGCAGGGCCTTCAGTAAGCACTCGTCTCTTACACAACACCAGGTCATCCACACCGGAGAAAAGCCCTATCAGTGCAGAGAGTGCGGGAAAGCGTTCAGGTATCAATCAACCCTTACCCGACACCACATTGTTCACACCGGCGCCAAACCCTACAAATGCCCAGAGTGCGACAAGGCCTTCAATAACAGTTCGACCCTCAGTCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGTCAGGAGTGCGGCCGGGCCTTCTACTGCTCCTCCTTCTTGATCCAGCATATGAAGATCCACTTCGAGGAGATGCCCTACAGGTGCAGAGAGTGTGGCAAGCCCTTCAGGCTCTCCTCCCAGCTTATCCGACACCAGAGAATCCACACCGGGGAGGAGCCCTACATATGCAGAGAGTGTGGCAAGACCTTCAAGTATCAGTCAAACCTCACCCGCCACCAGATACTTCATACCGGCGCCAAGCCCTACAAATGCCCAGAGTGCGGCAAGGCCTTCAATAACAGTTCCACCCTCACCCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGTCAGGAGTGCAGCAAGGCCTTCTACTGCTCCTCCTACTTGATCCAGCATATGAAGATCCACTTTGAAGAGATTCCCTATAGATGCAAAGAATGTGGTAAACCGTTCAAGTGTTCTTCACAGCTTATCCGACACCAGAGAATCCACAGCGGGGAGAAACCCTATATATGTAAGGAGTGCGGCAAGGCCTTCAACTGTACTTCATACCTTACTAAGCACCAGAGGATCCATACCGGGGAGAAACCCTACGTGTGTCAGGAGTGTGGCAAGGCCTTCAACTGTTCTTCCTATCTCTCTAAACATCAGAGGATTCACATTGGAGACAGACTCTATAAATGTAAAGAGTGTGGCAAAGCCTACTACTTCTCCTCACAGCTGAACCGACATCAGAGGATCCATACCGGGGAGAAACCCTATGTGTGCCAGGAGTGTGGCAAGGCCTTCAATTGTTCTTCATACCTTACTAAGCACCAGCGCATCCATATTGTAGAAAAACCGTATGTGTGTAAAGAGTGCAGCAAAGCCTTTAGCTGCTCCTCATACCTGACTAAACACCAGAGGATCCATGCTGGAGACAGGCTATACAAATGCACAGAGTGTGGCAAAGCCTACTGCTTCTCCTCACAGCTGAACCGACATCAGAGGATCCACACCAGAGAGAGACCCTATAGATGTAAGGAATGTGGCAAGGCCTTTATTACTTCCTCCTGCCTTAAACGACACCAGGAAACTCACACTCTCCAGACACCAAACAGTGTATAGAATTTGTGTATATGTGTATGTGTATAATAAGCAAAGCCTTACTAGGAAGACAGTTGTTACCGAGTGTTTCATAAAAGGGAAAAAACCCTGTTCTTGCACTTAGTGTCTTTAACAACTGCTGAACCTTCCATTTGCACCAAAAAGGCCCATCTATGAGGGGAGACGATACAGGTGTAAGGAGTCTGGCAAGACCTTTAAGTCGTGTGTGGTACTGTTTCAGAGTGTGTACTGAACATCCCATAGTTGAAAACTGTTACAGATGTGAGAACATGGCCTGGCCTTTGATCACAGCTTTTCTTTTTTCTTTTTTTTTTTTAAGATTTATTTATTTATTTATTCTGTGTATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTAGGACTTCTGCTCGCTCTGGTTGGCCCTGCTCCCTCGGTCTCTGCTCGCTCTGGCCCAAAGGTTTATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACACCACAAGAGGGCATCAGATCTCATTACAGGTGATTGTGAGCCACCATGTGGTTGCTGGGATTTGAACACAGGACCTTCGGAAGAACAGTCAGTGCTCTTATCCCCTGAGCCATCTCAACAGCCCGATCACTGCTCTTCTTTATTGGACAGTAGCAAATTCATATTGGGAAGAGTATTGTCCTATGTCTAACCCTCAGAACAGTCCAACACTATACTACAAATTCCCTCATAAAATGAAAAGATTGACATTTCACTAATACCTCAACAAATCTTTTTATTACAGACAGGATCTCTGTAATAGCCCTAGAACTCACTCTGTAGACCAGGCTAGCCTCAGACTCACAGAGATCTGCCTGCCTCTGTGTCCAGAGCACTGGGACTAAAGACATGCACCCCCAGGCCCAGCCCATACCTCAAAACTTGGTGTATACAAAAAATTATCGTTGGGCAGAAATCTTACAAATATGTAGAATGTGGCAAAATTTTGAACTGCTGCTTATCATTAATAAATGGGTGGAAAGACTATATCACAGGTGTCAGAGTGATTTGAACTCATCTTTGAAAGGATGGAATTTGTTTTACATCCAAATTTACTAAGTAACCTCACTTTAAAAACTATACAAAGCTCAGCCCTCAGGCCATCTCAGCAGAAAAATAATCCTGCTTTCTGAGAAGTTTTAAACCGTTCTTTTTCTAGAGAGCATAGAATTGATTTTGAAGAACTGTGTATTATGTATAGACTTTATTTTAGTACATACATGGAGTGAATGGTTCTTCACTTGTTATCTCTGGTATGTGTTGTTTGACATGTTATTTTGTCACAGAGATCAAACCGCCTTACCGTAGCATGTACATACAGATCTTAGTAATATATTGTTGAGAAATACTGAGTGATTGGTAGTTCTTGTTCCCAATGTCTTTATCCCTCAAACAGATGTATAGATTTGGAGATTTTTTTTGTGTATGTGATATTTTAATCCACCCTTTTTGCACTTAACCCAGAAATTACAAAGGATGTGAAAGTATAATAAAGTGTTCTAGCTTTCTGAAGCTCAAGTCATTTATACATTTGGTTTTTTGTCACATGGTTTTTATGCACACATCACCCCTTTGGATATATACAATGAACACCGAATTGTTGGTATTCGTTTGTGTTGACTGTGACGTAAAATCCCATGGCAAACCTTAGGAGTGAAAGTACAAAAGTTCTCTCTGCTCGTGGGTAATGATTAAAAATTAAAGGAAAGTTAAAAACCAAAAATCACTTTAAGGGAGCTGATATTTATGGCGAGGTAGAAAGCTTTTGTTTGGGGGAATAAAGTCTATTTTGTCTAAATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051034:ENSMUST00000049778:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types