RnoINT0004204 @ rn6
Intron Retention
Gene
ENSRNOG00000051442 | AABR07036019.1
Description
zinc finger protein 11 [Source:NCBI gene;Acc:100363065]
Coordinates
chr12:30662616-30668370:+
Coord C1 exon
chr12:30662616-30662711
Coord A exon
chr12:30662712-30665521
Coord C2 exon
chr12:30665522-30668370
Length
2810 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCTTCTCTTTCCTCTCCAGAGA
3' ss Score
11.44
Exon sequences
Seq C1 exon
GTCTTGCTGTGTGTAAGCCTTCCCTGGTCACACTGCTGGAACAGATACAAGAGCCTTGGGATGTGAAGGGACAGGAGTCAGGAACCATGTACCCAG
Seq A exon
GTAGGTAGATATGGCACAGAAGACACAGAAAGATGCCCGGCTTTCAGATGTGGACTGGGAAGCTCTGTTTCAGTGGAAATGATTTTTCTAGAGCTGGCATCACAGATAGTTGTGAGCTGCCATGTGGGTGCCGGGAACTGAACCCAGGTCCTATGGATGAGCTACACATGCTTGCAACTGTGAGCTATCTCTCCGGCCCTAACCACATAACCTTTAAGTGTATAAATAATGAATTAAAAGAATAGTAATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGGAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAAAAGAATAGTAATATAAAGTCTATCATCTGTTCCTGTCTCTCTGGGCCAGGGCCATCCAGATAATATGCCAGTGAACCACATAGAATTCATCAGGGTCCTTCAAATAGATTTTTGTTTTCTGTAGGGTCTTACTTTTATCTTTATCTGCTTAGGACTCCAGGGCTTAGACTGGAGGGAATTCTCTGTGGTTGAGAACAAGTCCTGCTTTTGTGGAGGACACAAATTTGATTCTCAGTGCTCAGTTTGATGGGGAGCTCACAACTTCCCATAATCCAGGGGCTCCCTTGCTCCCTTCTGGCCTCTGCAGGTGCGTGCACATACATTCTCCTGTTCTGACTAGACTGAAGTTACCTGTCAGCCCTCAGACACCTCATTCATGCCTCAATCCTCTCTTTTCCTCTCCCAAGAGGGCAGACTGATGTGGGAAGTAGTTTATATTTTGGGGTGACCATGGAATGCTGTTTTCAGAAAAGAGGAGCTGTGGTTGATGACAAAGATAAAAAAACAAAACAAAACAAAAAAAACTTCCCTCAGGTGGCCTTAGTTGTTGTCCTCACTGGGGCATGTCCGTCCATGTTAAGTTCTTTGGGGATTTACCACAAAGGCAGTTGACTGTTATCTGTTGTTAGTTTCACATTCCTGTGGGGCCATGGAGAGGCTCCTCGGTCTGCTCTTCTGCCATCCCAAGGATGTGTCCTCTTGGCCTGGCTTTGATGTTAGATTTAGAAGTAAGCCACCTTAGTGTAGCAACTGAGGTGACTGGTTATTTTGTAACAGCTGAGGTGACTGGTTATTTTGTAGCTGCTGAGGTGACTGGTTATTTTGTAGCCAGAGGTGACTGGTTATTTTGTAGCCAGAGGTGACTGGTTATTTTGTAACATCTGAGGTGACGGGTTATTTTGTAACAGCTGAGGTGACTGGTTATTTTGTAACAGCTGAGGTGACTGGTTATTTTGTAGCCAGAGGTGACTGGTTATTCTGTAACAGCTGAGGTGACTGGTTATTTTATAACATCTAAGGTGACTGGTTATTTTGTGACAGCCGAGGTGACTGGTTATTTTGTAGCTGCTGAGGTGACAGGTGTTTCTCATTATCCCTAGGCTTTTCACTAGAGCAGGACAAAACAAACAAACAAACAAACAAACAAACAAACAAAAGACATTTATTCTAAACTATGATAGGGAGAAGATTTGGGAATTATGACCTTAACAATTTGTATTAAAGAAAGACAAGAATGTAACACAGCCTTCTGATATCAGCTAACCCTTACTTGACACAAAATTGTTTCCACTGGGGCAAAACCCTACTGATGCCAAGAGTGTGGCAAAGGCTTCAGTAATAGCTCAACTCTTAGTCGACACCAGAGAGTTCATACAGGAGAAAGGCCCTACAAATGCGCAGTTTACAGTATGGTACAACCCTGCAAAACCAACAGCCCATGATCAACTGAGATCAAGAGCATACAGCATCCCAGAAAATCAGTTAAGAGACTATATGTTTGATGAAATAGCCGCATCACATCTGGTAATGTAAGTTTCTACTAATGAAGTTTGGGTAATTAATGCACCTGTTTCATGCTTTAACTAGGAACTTGAACAACTGAAATGCAGCCGGACTGAACTTTGAAGCAAATGTTCATTTAGAAGGAGACTGGGGAATGAGGCTGCCATGGTTTTGGGGACCCCATTGCTCTGCTGCTGGCTTTTGTTTTCTCTGCACCGCAACATACAGCTGAACACACACAGAAGTGTTATTGTTGTTTTGGGGTTTGTGGTGCTTTGAATATGCTTGGCCCAGGGAGTAGCACTATTAGGAGGTGTGGCCTTGTTGGAGGAAGTGTGTCACTGTGGGGGTGGGCTTGGAGACCCTCCTCCTAGCTGCTTGCAAGGCAGTCTTCTGTTTGCCTTTGGAACAAGATATAGAACTCTCACTCCTCCACCATCATGCCTGCCTGGATGCTGCCATCTCCCACCTTGATGATCATGGACTGAACCTCTGAACCTATAAGCCAGCCCCAGTTAAATGTTGTCCTTTATAAGAATTGCCTTGGTAATGGTGTCTGTTCACAGCAGTAAAACCACTTAAGACACTGTTATTAGGTTTTGTTTTTTGTTTGTTTGTTTTAGTCGTCGTTTATTTGTTTTAAGACAAGGTCTCACCGTATAGCCCAGGCTATCCTGGCCCTTGTTATGGAGTCCCTGCACCCCTTGAACTTGCCTTGATCTTTTTGCTTCACCATCCTCAATGCTGAGCTTACAGTTCCCACACTCAGTTAACCCCAATCAGTTCTTTTCTCCATGCACATCGTCATCGGATCCTTGGAGAATCCAGCCCACGTGTAATGAAATAGGCCGTTAATGAGGCTGTGAAATAGCGCCTGGGAGAAAAAATGCTGTTAGTCTAATGTCATTCATAGCTTTAGCCATGAAATTGTCTCTTCTCTTTCCTCTCCAG
Seq C2 exon
AGAATCTTTCTGACTGTAACAACTCAGCAAAAGACTTTGATCAACATGCAAAACTTACCATCCATCAGTGTGCGCACCGCAAAGAGACGTCAGACAAGCAGGAAGACGGTGACGAATCAGCTTCTGATCAGCATCTCAGGGTGCGTACAGGAGACATGGTCTACAAGTGTAAAGACTGTGGGAAAGCCTTCAAATACCGCTCAGTCCTCTACCAGCACCACATAAGTCACACGGCTGCAAGGCCCTACAAATGTAAAGAGTGCGGCAAAGCCTTCAAGAGAAGCAGAAACCTTGCTCAGCACCAGGTGACTCATAAGAGAGAGAAGCCACACAAGTGCGAAGAGTGCGGCCGAGCCTTTACCACACTTTCTGTCCTTACGCAGCACCGAGTCACCCACACCGGAGAGAAGCCCTACCAGTGTAAAGAATGCGGCAGAGCCTTTAAATATAACTCAACCCTCACTCAGCACGAAGTCATTCATACTGAAGCCAAACCGTACAGATGTCAGGAATGTGGCAAAGCCTTCAAGAGAAGCCACACACTCAGTCAACACCAGGTGACTCACAAAGGAGAGAAACCGCACAAATGCGAAGAATGTGGGAAGGCCTTCAGCAAGCATTCGTCTCTTACCCAGCACCAGGTCATCCACACTGGAGAGAAGCCGTATCAGTGCAGAGAGTGCGGGAAGGCCTTCAAGTATCAGTCAACCCTTACCCGACACCAGATTGTTCACACCGGCACGAAGCCCTACAAATGTCCGGAATGCGGCAAGGCCTTCAATAACAGTTCCACCCTTAGTCGGCACCAGATAATCCACACGGGAGAGAAGCCCTACAAGTGTCAGGAGTGCGGCAGGGCCTTTTACTGCTCCTCCTTCTTGATCCAGCACATGAAGATTCATTTTGAAGAGATGCCCTACAGATGTAAAGAGTGTGGTAAGCCCTTCCGGCTTTCCTCCCAGCTTATCCGACACCAGAGGATCCACACTGGAGAGGAGCCCTACATCTGCAAAGAGTGTGGCAAAACCTTCAAGTATCAGTCAAACCTTACCCGTCACCAGATACTTCATACTGGCGCGAAGCCCTACAAATGTCCGGAATGCGGCAAGGCCTTCAATAACAGTTCCACCCTTAGTCGGCACCAGATAATCCACACGGGAGAGAAGCCCTACAAGTGTCAGGAGTGTGGCAGGGCCTTTTACTGCTCCTCCTACTTGATCCAGCACATGAAGATTCATTTTGAAGAGATTCCCTACAGATGTAAAGAGTGTGGTAAGCCCTTTAAGTGTTCTTCCCAGCTTATCCGACACCAGAGGATCCACAGCGGAGAGAAACCCTATATATGTAAGGAATGCGGCAAGGCCTTCAACTGTACCTCATACCTTACCAAGCATCAGAGGACCCACACCGGGGAGAAGCCCTATGTGTGTCAGGAGTGTGGCAAGGCCTTCAACTGTTCTTCCTATCTCTCCAAACATCAGAGGATTCATCTTGGAGACAGACTCTATAAATGTAAGGAGTGCGGCAAAGCCTATTACTTTTCGGCATCAGAGAATTCACACCGGGGAGAAACCCTACGTGTGTCAGGAGTGTGGCAAGGCCTTCAACTGTTCTTCCTACCTTCAGAAGCATCAGCGAATCCACATTGTAGAAAAGCCCTATGTGTGTAAGGAGTGTGGCAAGGCTTTTAACTGTTCCTCATACCTTACTAAACACCAAAGGGTTCACACCGGAGACAGGTCCTACAAGTGTAGGGAGTGCGGCAAGGCCTACTACTTTTCCTCACAGCTCACGCGACATCAGAGGACTCATACCAGAGAGAAGCCCTATCGATGTAAAGAATGTGGCAAGGCCTTCATTACTTCCTCCAGCCTTAAGCGACACCAGGAGACTCACACGCTCCTGAAACCGAGCCACGTCTAGAATTGGTGTATGTGTATATGTGTAGAAGCGACGCCTTAATGGGAAGAGAGTTGTTACTGGGTGTCTCATAAAGGAGGAAAACTCGTTCATGCACTTACTGTCTTTAAAAATTGCTGAATCTTCCGTTTGCACCAAGAGGCCCATATATGAGCGGAGACAATGCAGGTATAAGGGATGCGGCAAAACCTTTAAAAGGTGCATGGCACTGTTTCAGAACTGTTACAGATGTGATAATGTGGCCTGACCTTTGATCAAAGCCCTTCTTTGTTGGACAATGGGAAATTCATATTGGAAAGAGTATTATTGTCCTATGTCTAACCCCTAGAACACTCCAATACTATACTGTAAAGCCCCTCATAAAATGAAAAGATTAATATAGCTTTCACTAATACATCAGCAAATCCTTTTTTTTTAAAGACAGGGTCTCTGTAATAGCCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAGACTCACAGAGATCTTTCTGTCTCTGCATCCAGAGCACTGGGACGAAAGGCTGGCATCCCCGTGCCCAGCCCATACCTCAAAAATTGACGTGTATAAAGAATTATCATAGGCAGTTGAAAAACTGTGTATTATGTAGAGACTCTATTTTAGTACATACACGGAGTGAATGGTTCTTCGTTTGTCCTCTCTGGTATGTGTTGTTGGACCTGTTATTTTTGTCACAGAGATTAAACCACCTTACTGTAGCATGCACAGAAGAGATCTTAGTACTATATCATTGAAGAATACTGAATGACTGGCGGTTCTTGTTCCCCTTGTCTTTATCCCTCCAACAGATGTATGGATTTGGAGATGTTTTTGTATGTGATATTTTAATCCATCCTTTTTGCACTTAACCCAGAAATTACAAAGGATGTGAAAGTGTAATAAAGTGTTCTAGCTTTCTGAATCTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051442:ENSRNOT00000079144:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.1),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]